Antisense nucleic acids

ABSTRACT

Provided is a drug that allows highly-efficient skipping of exon. The present invention provides an antisense oligomer wherein two or more unit oligomers targeting sequences that are neither consecutive nor overlap with each other in the same exon are connected.

CROSS REFERENCE TO RELATED APPLICATIONS

This application is a continuation application of U.S. application Ser.No. 15/314,535, filed Nov. 29, 2016, which is a National. Stage ofInternational Application No. PCT/JP2015/067238, filed Jun. 16, 2015,which claims priority to Japanese Application No. 2014-124157 filed onJun. 17, 2014, all of which are incorporated by reference in theirentireties.

REFERENCE TO A SEQUENCE LISTING

The instant application contains a Sequence Listing which has beensubmitted in ASCII format via EFS-Web and is hereby incorporated byreference in its entirety. Said ASCII copy, created on Jul. 14, 2017 isnamed 209658_0004_01US_563480_SL.txt and is 31,562 bytes in size.

TECHNICAL FIELD

The present invention relates to an antisense oligomer for exonskipping, comprising a nucleotide sequence complementary to two or moredifferent sequences in a target exon. More specifically, the presentinvention relates to an antisense oligomer which causes skipping of exon44 in the human dystrophin gene, and a pharmaceutical compositioncomprising the oligomer.

Duchenne muscular dystrophy (DMD) is the most frequent form ofhereditary progressive muscular dystrophy that affects one in about3,500 newborn boys. Although the motor functions are rarely differentfrom healthy humans in infancy and childhood, muscle weakness isobserved in children from around 4 to 5 years old. Then, muscle weaknessprogresses to the loss of ambulation by about 12 years old and death dueto cardiac or respiratory insufficiency in the twenties. DMD is such asevere disorder. At present, there is no effective therapy for DMDavailable, and it has been strongly desired to develop a noveltherapeutic agent.

DMD is known to be caused by a mutation in the dystrophin gene. Thedystrophin gene is located on X chromosome and is a huge gene consistingof 2.2 million DNA nucleotide pairs. DNA is transcribed into mRNAprecursors, and introns are removed by splicing to synthesize mRNA of13,993 bases, in which 79 exons are joined together. This mRNA istranslated into 3,685 amino acids to produce the dystrophin protein. Thedystrophin protein is associated with the maintenance of membranestability in muscle cells and necessary to make muscle cells lessfragile. The dystrophin gene from patients with DMD contains a mutationand hence, the dystrophin protein, which is functional in muscle cells,is rarely expressed. Therefore, the structure of muscle cells cannot bemaintained in the body of the patients with DMD, leading to a largeinflux of calcium ions into muscle cells. Consequently, aninflammation-like response occurs to promote fibrosis so that musclecells can be regenerated only with difficulty.

Becker muscular dystrophy (BMD) is also caused by a mutation in thedystrophin gene. The symptoms involve muscle weakness but are typicallymild and slow in the progress of muscle weakness, when compared to DMD.In many cases, its onset is in adulthood. Differences in clinicalsymptoms between DMD and BMD are considered to reside in whether thereading frame for amino acids on the translation of dystrophin mRNA intothe dystrophin protein is disrupted by the mutation or not (Non-PatentDocument 1). More specifically, in DMD, the presence of mutation shiftsthe amino acid reading frame so that the expression of functionaldystrophin protein is abolished, whereas in BMD the dystrophin proteinthat functions, though imperfectly, is produced because the amino acidreading frame is preserved, while a part of the exons are deleted by themutation.

Exon skipping is expected to serve as a method for treating DMD. Thismethod involves modifying splicing to restore the amino acid readingframe of dystrophin mRNA and induce expression of the dystrophin proteinhaving the function partially restored (Non-Patent Document 2). Theamino acid sequence part, which is a target for exon skipping, will belost. For this reason, the dystrophin protein expressed by thistreatment becomes shorter than normal one but since the amino acidreading frame is maintained, the function to stabilize muscle cells ispartially retained. Consequently, it is expected that exon skipping willlead DMD to the similar symptoms to that of BMD which is milder. Theexon skipping approach has passed the animal tests using mice or dogsand now is currently assessed in clinical trials on human DMD patients.

The skipping of an exon can be induced by binding of antisense nucleicacids targeting either 5′ or 3′ splice site or both sites, orexon-internal sites. An exon will only be included in the mRNA when bothsplice sites thereof are recognized by the spliceosome complex. Thus,exon skipping can be induced by targeting the splice sites withantisense nucleic acids. Furthermore, the binding of an SR protein,which is rich in serine and arginine, to an exonic splicing enhancer(ESE) is considered necessary for an exon to be recognized by thesplicing mechanism. Accordingly, exon skipping can also be induced bytargeting ESE.

Since a mutation of the dystrophin gene may vary depending on DMDpatients, antisense nucleic acids need to be designed based on the siteor type of respective genetic mutation. There are several reports onantisense nucleic acids that induce exon skipping with one consecutivesequence as a target for a single exon in the dystrophin gene (PatentDocuments 1 to 6 and Non-Patent Documents 1 and 2). Also, it has beenreported that when two types of antisense nucleic acids targeting thesame exon in the dystrophin gene are mixed and allowed to act (dualtargeting), skipping activity may be enhanced as compared with use ofeach antisense nucleic acid alone (Patent Document 7).

However, none of the previous reports show that a connected singlestrand antisense nucleic acid (connected type) targeting two or moresites in the same exon exhibits skipping activity (Patent Document 1).

PRIOR ART DOCUMENT Patent Document

-   Patent Document 1: International Publication WO 2004/048570-   Patent Document 2: International Publication WO 2009/139630-   Patent Document 3: International Publication WO 2010/048586-   Patent Document 4: US 2010/0168212-   Patent Document 5: International Publication WO 2011/057350-   Patent Document 6: International Publication WO 2006/000057-   Patent Document 7: International Publication WO 2007/135105

Non-Patent Document

-   Non-Patent Document 1: Annemieke Aartsma-Rus et al., (2002)    Neuromuscular Disorders 12: S71-S77-   Non-Patent Document 2: Wilton S. D., et al., Molecular Therapy 2007:    15: p. 1288-96

DISCLOSURE OF THE INVENTION Problems to be Solved by the Invention

Under these circumstances, a main object of the present invention is toprovide a novel connected type antisense oligomer which induces exonskipping by targeting two different nucleotide sequences in the sameexon in the dystrophin gene, and a therapeutic agent for musculardystrophy comprising the oligomer.

Means for Solving the Problem

The present inventors have conducted extensive studies on the contentsof the techniques described in the documents described above and thestructure of the dystrophin gene, etc., and consequently found that anantisense oligomer obtained by connecting oligomers targeting twodifferent sites in exon 44 in the human dystrophin gene can induceskipping of this exon. Based on this finding, the present inventors haveaccomplished the present invention.

That is, the present invention is as follows.

[1]

An antisense oligomer having a length of 15 to 30 bases wherein

(a) a first unit oligomer comprising a nucleotide sequence complementaryto a first nucleotide sequence of 7 to 15 consecutive bases in a targetexon; and

(b) a second unit oligomer comprising a nucleotide sequencecomplementary to a second nucleotide sequence of 7 to 15 consecutivebases in the target exon are connected, wherein

the first nucleotide sequence and the second nucleotide sequence areneither consecutive nor overlap with each other, and

the antisense oligomer induces skipping of the target exon, or apharmaceutically acceptable salt or hydrate thereof.

[2]

The antisense oligomer according to [1], wherein the first and/or secondunit oligomer comprises a nucleotide sequence complementary to a partialnucleotide sequence of an intron adjacent to the target exon, or apharmaceutically acceptable salt or hydrate thereof.

[3]

The antisense oligomer according to [1] or [2], wherein the target exonis an exon in human dystrophin gene, or a pharmaceutically acceptablesalt or hydrate thereof.

[4]

The antisense oligomer according to [1] or [2], wherein the firstnucleotide sequence is a nucleotide sequence of 7 to 15 consecutivebases selected from the nucleotide sequence represented by SEQ ID NO: 1,or a pharmaceutically acceptable salt or hydrate thereof.

[5]

The antisense oligomer according to any one of [1] to [3], wherein thesecond nucleotide sequence is a nucleotide sequence of 7 to 15consecutive bases selected from the nucleotide sequence represented bySEQ ID NO: 2, or a pharmaceutically acceptable salt or hydrate thereof.

[6]

The antisense oligomer according to [1] or [2], wherein two unitoligomers selected from the group consisting of the following (c) to (e)are connected:

(c) a unit oligomer consisting of a nucleotide sequence complementary toa nucleotide sequence of 7 to 15 consecutive bases selected from thenucleotide sequence represented by SEQ ID NO: 3;

(d) a unit oligomer consisting of a nucleotide sequence complementary toa nucleotide sequence of 7 to 15 consecutive bases selected from thenucleotide sequence represented by SEQ ID NO: 4; and

(e) a unit oligomer consisting of a nucleotide sequence complementary toa nucleotide sequence of 7 to 15 consecutive bases selected from thenucleotide sequence represented by SEQ ID NO: 5, or a pharmaceuticallyacceptable salt or hydrate thereof.

[7]

The antisense oligomer according to [1] or [2], which consists of anucleotide sequence selected from a group consisting of SEQ ID Nos: 6 to9, or a pharmaceutically acceptable salt or hydrate thereof.

[8]

The antisense oligomer according to any one of [1] to [7], which is anoligonucleotide, or a pharmaceutically acceptable salt or hydratethereof.

[9]

The antisense oligomer according to [8], wherein the sugar moiety and/orthe phosphate-binding region of at least one nucleotide constituting theoligonucleotide is modified, or a pharmaceutically acceptable salt orhydrate thereof.

[10]

The antisense oligomer according to [8] or [9], wherein the sugar moietyof at least one nucleotide constituting the oligonucleotide is a ribosein which the 2′-OH group is replaced by any one selected from the groupconsisting of OR, R, R′OR, SH, SR, NH₂, NHR, NR₂, N₃, CN, F, Cl, Br andI (wherein R is an alkyl or an aryl and R′ is an alkylene), or apharmaceutically acceptable salt or hydrate thereof. [11]

The antisense oligomer according to any one of [8] to [10], wherein thephosphate-binding region of at least one nucleotide constituting theoligonucleotide is any one selected from the group consisting of aphosphorothioate bond, a phosphorodithioate bond, an alkylphosphonatebond, a phosphoramidate bond and a boranophosphate bond, or apharmaceutically acceptable salt or hydrate thereof.

[12]

The antisense oligomer according to any one of [1] to [7], which is amorpholino oligomer, or a pharmaceutically acceptable salt or hydratethereof.

[13]

The antisense oligomer according to claim [12], which is a morpholinooligomer, or a pharmaceutically acceptable salt or hydrate thereof.

[14]

The antisense oligomer according to [12] or [13], wherein the 5′ end isany one of chemical formulae (1) to (3) below, or a pharmaceuticallyacceptable salt or hydrate thereof.

[15]

A pharmaceutical composition for the treatment of muscular dystrophy,comprising as an active ingredient the antisense oligomer according toany one of [1] to [14], or a pharmaceutically acceptable salt or hydratethereof.

[16]

The pharmaceutical composition according to [15], comprising apharmaceutically acceptable carrier.

[17]

A method for treatment of muscular dystrophy, which comprises providingto a patient with muscular dystrophy the antisense oligomer or apharmaceutically acceptable salt or hydrate thereof according to any oneof [1] to [12] or the pharmaceutical composition according to [1] or[16].

[18]

The method for treatment according to [17], wherein the patient withmuscular dystrophy has a mutation(s) which is to be targeted for exon 44skipping in gystrophin gene.

[19]

The method for treatment according to [17] or [18], wherein the patientis a human.

[20]

The use of the antisense oligomer or a pharmaceutically acceptable saltor hydrate thereof according to any one of [1] to [14] in manufacturingof the pharmaceutical composition for the treatment of musculardystrophy.

[21]

The antisense oligomer, or a pharmaceutically acceptable salt or hydratethereof according to any one of [1] to [14], that is applied for thetreatment of muscular dystrophy.

[22]

The antisense oligomer, or a pharmaceutically acceptable salt or hydratethereof according to [21] wherein the patient with muscular dystrophy inthe said treatment has a mutation(s) which is to be targeted for exon 44skipping in gystrophin gene.

[23]

The antisense oligomer according to [21] or [22], or a pharmaceuticallyacceptable salt or hydrate thereof, wherein the patient is a human.

[24]

A method for manufacturing of the antisense oligomer according to [1],which comprises connecting

(a) a first unit oligomer comprising a nucleotide sequence complementaryto a first nucleotide sequence of 7 to 15 consecutive bases in a targetexon; and

(b) a second unit oligomer comprising a nucleotide sequencecomplementary to a second nucleotide sequence of 7 to 15 consecutivebases in the target exon to produce an antisense oligomer having alength of 15 to 30 bases, wherein the first nucleotide sequence and thesecond nucleotide sequence are neither consecutive nor overlap with eachother.

[25]

The method according to [24], which further comprises:

measuring the efficiency of skipping by the obtained antisense oligomer;and

selecting an antisense oligomer having the efficiency of skipping thatexceeds a reference value.

[26]

A method for screening of an antisense oligomer, which comprises:

(a) selecting

(i) a first unit oligomer comprising a nucleotide sequence complementaryto a first nucleotide sequence of 7 to 15 consecutive bases in a targetexon; and

(ii) a second unit oligomer comprising a nucleotide sequencecomplementary to a second nucleotide sequence of 7 to 15 consecutivebases in the target exon, wherein the first nucleotide sequence and thesecond nucleotide sequence are neither consecutive nor overlap with eachother;

(b) connecting the first and second unit oligomers to produce anantisense oligomer having a length of 15 to 30 bases;

(c) measuring the efficiency of skipping by the antisense oligomerobtained in the step (b); and

(d) selecting an antisense oligomer having the efficiency of skippingthat exceeds a reference value.

Effects of the Invention

The antisense oligomer of the present invention can induce skipping ofexon 44 in the human dystrophin gene with a high efficiency. Also, thesymptoms of Duchenne muscular dystrophy can be effectively alleviated byadministering the pharmaceutical composition of the present invention.

BRIEF DESCRIPTION OF DRAWINGS

FIG. 1 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cell line (RD cells).

FIG. 2 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 3 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 4 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 5 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 6 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 7 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 8 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 9 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 10 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 11 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 12 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 13 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 14 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 15 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 16 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 17 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 18 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 19 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 20 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 21 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 22 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 23 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 24 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 25 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 26 shows the efficiency of exon 44 skipping in the human dystrophingene in human rhabdomyosarcoma cells (RD cells) at the respectiveconcentrations of the oligomers.

FIG. 27 shows a comparison of the efficiency of exon 44 skipping in thehuman dystrophin gene in human rhabdomyosarcoma cells (RD cells) betweena connected form and a mixture of two unit oligomers targeting differentsites.

FIG. 28 shows a comparison of the efficiency of exon 44 skipping in thehuman dystrophin gene in human rhabdomyosarcoma cells (RD cells) betweena connected form and a mixture of two unit oligomers targeting differentsites.

FIG. 29 shows a comparison of the efficiency of exon 44 skipping in thehuman dystrophin gene in human rhabdomyosarcoma cells (RD cells) betweena connected form and a mixture of two unit oligomers targeting differentsites.

FIG. 30 shows a comparison of the efficiency of exon 44 skipping in thehuman dystrophin gene in human rhabdomyosarcoma cells (RD cells) amongeach alone, a connected form and a mixture of two unit oligomerstargeting different sites.

FIG. 31 shows a comparison of the efficiency of exon 44 skipping in thehuman dystrophin gene in human rhabdomyosarcoma cells (RD cells) amongeach alone, a connected form and a mixture of two unit oligomerstargeting different sites.

FIG. 32 shows the efficiency of exon 44 skipping in the human dystrophingene in the fibroblasts from human DMD patient with deletion of exon 45.

MODE FOR CARRYING OUT THE INVENTION

Hereinafter, the present invention is described in detail. Theembodiments described below are intended to be presented by way ofexample merely to describe the invention but not limited only to thefollowing embodiments. The present invention may be implemented invarious ways without departing from the gist of the invention.

All of the publications, published patent applications, patents andother patent documents cited in the specification are hereinincorporated by reference in their entirety. The specification herebyincorporates by reference the contents of the specification and drawingsin the Japanese Patent Application (No. 2014-124157) filed Jun. 17,2014, from which the priority was claimed.

1. Antisense Oligomer

The present invention provides an antisense oligomer having a length of15 to 30 bases wherein

(a) a first unit oligomer comprising a nucleotide sequence complementaryto a first nucleotide sequence of 7 to 15 consecutive bases in a targetexon; and

(b) a second unit oligomer comprising a nucleotide sequencecomplementary to a second nucleotide sequence of 7 to 15 consecutivebases in the target exon are connected, wherein

the first nucleotide sequence and the second nucleotide sequence areneither consecutive nor overlap with each other, and the antisenseoligomer induces skipping of the target exon, or a pharmaceuticallyacceptable salt or hydrate thereof.

Hereinafter, “an antisense oligomer, or a pharmaceutically acceptablesalt or hydrate thereof” may be generically called “an antisenseoligomer” collectively.

The antisense oligomer described above can be manufactured by a methodfor manufacturing which comprises connecting

(a) a first unit oligomer comprising a nucleotide sequence complementaryto a first nucleotide sequence of 7 to 15 consecutive bases in a targetexon; and

(b) a second unit oligomer comprising a nucleotide sequencecomplementary to a second nucleotide sequence of 7 to 15 consecutivebases in the target exon to produce an antisense oligomer having alength of 15 to 30 bases, wherein the first nucleotide sequence andsecond nucleotide sequence are neither consecutive nor overlap with eachother.

The method for manufacturing may further comprise

the step of measuring the efficiency of skipping by the obtainedantisense oligomer, and a secondary step of selecting an antisenseoligomer having the efficiency of skipping that exceeds a referencevalue.

In the secondary step of the manufacturing method described above, theskipping efficiency can be determined as follows. The mRNA for the genecomprising the targeted exon is collected from test cells; in the mRNA,the polynucleotide level “A” of the band where the targeted exon isskipped and the polynucleotide level “B” of the band where the targetedexon is not skipped are measured. Using these measurement values of “A”and “B,” the efficiency is calculated by the following equation:Skipping efficiency (%)=A/(A+B)×100

Alternatively, for calculation of the efficiency of skipping,International Publication WO2012/029986 may be referred.

In the secondary step, the efficiency of skipping used as the referencevalue is 10% or more, 20% or more, 30% or more, 40% or more, 50% ormore, 60% or more, 70% or more, 80% or more or 90% or more.

By connecting a plurality of unit oligomers as mentioned above, anantisense oligomer having improved skipping activity can be obtainedeven if each of the unit oligomers has low skipping activity (or noskipping activity).

The present invention also provides a method for screening of anantisense oligomer, which comprises:

(a) selecting

(i) a first unit oligomer comprising a nucleotide sequence complementaryto a first nucleotide sequence of 7 to 15 consecutive bases in a targetexon; and

(ii) a second unit oligomer comprising a nucleotide sequencecomplementary to a second nucleotide sequence of 7 to 15 consecutivebases in the target exon, wherein the first nucleotide sequence and thesecond nucleotide sequence are neither consecutive nor overlap with eachother;

(b) connecting the first and second unit oligomers to produce anantisense oligomer having a length of 15 to 30 bases;

(c) measuring the efficiency of skipping by the antisense oligomerobtained in the step (b); and

(d) selecting an antisense oligomer having the efficiency of skippingthat exceeds a reference value.

In the antisense oligomer described above, the first and second unitoligomers can be connected in a manner where either one of the first andsecond unit oligomers is positioned on the 5′ or 3′ side of the other.In an embodiment, the first unit oligomer is positioned on the 5′ side,and the second unit oligomer is positioned on the 3′ side for theconnection.

Also, the antisense oligomer may comprise a third unit oligomercomprising a nucleotide sequence complementary to a third nucleotidesequence of 7 to 15 consecutive bases in the target exon.

As used herein, the term “connect” refers to one where the two unitoligomers are directly bound to each other or one where the two unitoligomers are bound to each other via a linker. When the two unitoligomers are directly bound to each other, then the 3′ end of the unitoligomer positioned on the 5′ side and the 5′ end of the other unitoligomer positioned on the 3′ side form a phosphate bond or a groupshown below. Example of the linker include a nucleic acid (chain) of 1to 5 residues as well as a known linker usually used for connectingnucleic acids or morpholino nucleic acid derivatives, such as3-aminopropyl, succinyl, 2,2′-diethanolsulfonyl and long chainalkylamino (LCAA).

wherein X represents —OH, —CH₂R¹, —O—CH₂R¹, —S—CH₂R¹, —NR²R³ or F;

R¹ represents H or an alkyl;

R² and R³, which may be the same or different, each represents H, analkyl, a cycloalkyl or an aryl;

Y₁ represents O, S, CH₂ or NR¹;

Y₂ represents O, S or NR¹;

Z represents O or S.

The first and/or second unit oligomer may comprise a nucleotide sequencecomplementary to a partial nucleotide sequence of an intron adjacent tothe target exon. In an embodiment in which, for example, the first andsecond unit oligomers are connected with each other in a way where thefirst unit oligomer is positioned on the 5′ side and the second unitoligomer are positioned on the 3′ side, the 5′ side of the first unitoligomer may comprise a nucleotide sequence complementary to anucleotide sequence residing in the proximity to the 3′ end of an intronadjacent on the 5′ side of the target exon, and/or the 3′ side of thesecond unit oligomer may comprise a nucleotide sequence complementary toa nucleotide sequence residing in the proximity to the 5′ end of anintron adjacent on the 3′ side of the target exon.

The first and/or second unit oligomer may comprise a nucleotide sequencecomplementary to a partial nucleotide sequence of an exonic splicingenhancer (ESE) of the target exon.

The target exon is not particularly limited. In an embodiment, thetarget exon is an exon in a human gene and is further an exon in humandystrophin gene.

More specifically, the target exon is exon 44 in the human dystrophingene.

Thus, in an embodiment, the present invention provides an antisenseoligomer which causes skipping of exon 44 in the human dystrophin gene(hereinafter, referred to as “the oligomer of the present invention”).Hereinafter, the structure of the antisense oligomer of the presentinvention will be described in detail.

[Exon 44 in Human Dystrophin Gene]

In the present invention, the term “gene” is intended to mean a genomicgene and also include cDNA, mRNA precursor and mRNA. Preferably, thegene is mRNA precursor, i.e. pre-mRNA.

In the human genome, the human dystrophin gene locates at locus Xp21.2.The human dystrophin gene has a size of 3.0 Mbp and is the largest geneamong known human genes. However, the coding regions of the humandystrophin gene are only 14 kb, distributed as 79 exons throughout thehuman dystrophin gene (Roberts, R G, et al., Genomics, 16: 536-538(1993)). The pre-mRNA, which is the transcript of the human dystrophingene, undergoes splicing to generate mature mRNA of 14 kb. Thenucleotide sequence of human wild-type dystrophin gene is known (GenBankAccession No. NM_004006).

The nucleotide sequence of exon 44 in the human wild-type dystrophingene is represented by SEQ ID NO; 10.

In an embodiment, the oligomer of the present invention is designed tocause skipping of exon 44 in the human dystrophin gene, therebymodifying the protein encoded by DMD type of dystrophin gene into theBMD type of dystrophin protein. Accordingly, exon 44 in the dystrophingene that is the target of exon skipping by the antisense oligomer ofthe present invention includes both wild and mutant types.

Specifically, exon 44 mutants of the human dystrophin gene include thepolynucleotides defined in (I) or (II) below.

(I) A polynucleotide that hybridizes under stringent conditions to apolynucleotide consisting of a nucleotide sequence complementary to thenucleotide sequence of SEQ ID NO: 10; and,

(II) A polynucleotide consisting of a nucleotide sequence having atleast 90% identity with the nucleotide sequence of SEQ ID NO: 10.

As used herein, the term “polynucleotide” is intended to mean DNA orRNA.

As used herein, the term “polynucleotide that hybridizes under stringentconditions” refers to, for example, a polynucleotide obtained by colonyhybridization, plaque hybridization, Southern hybridization or the like,using as a probe all or part of a polynucleotide consisting of anucleotide sequence complementary to the nucleotide sequence of, e.g.,SEQ ID NO: 10. The hybridization method which may be used includesmethods described in, for example, “Sambrook & Russell, MolecularCloning: A Laboratory Manual Vol. 3, Cold Spring Harbor, LaboratoryPress 2001,” “Ausubel, Current Protocols in Molecular Biology, JohnWiley & Sons 1987-1997,” etc.

As used herein, the term “complementary nucleotide sequence” is notlimited only to nucleotide sequences that form Watson-Crick pairs withtarget nucleotide sequences, but is intended to also include nucleotidesequences which form Wobble base pairs. As used herein, the termWatson-Crick pair refers to a pair of nucleobases in which hydrogenbonds are formed between adenine-thymine, adenine-uracil orguanine-cytosine, and the term Wobble base pair refers to a pair ofnucleobases in which hydrogen bonds are formed between guanine-uracil,inosine-uracil, inosine-adenine or inosine-cytosine. As used herein, theterm “complementary nucleotide sequence” does not only refers to anucleotide sequence 100% complementary to the target nucleotide sequencebut also refers to a complementary nucleotide sequence that may contain,for example, 1 to 3, 1 or 2, or one nucleotide non-complementary to thetarget nucleotide sequence.

As used herein, the term “stringent conditions” may be any of lowstringent conditions, moderate stringent conditions or high stringentconditions. The term “low stringent conditions” are, for example, 5×SSC,5×Denhardt's solution, 0.5% SDS, 50% formamide at 32° C. The term“moderate stringent conditions” are, for example, 5×SSC, 5×Denhardt'ssolution, 0.5% SDS, 50% formamide at 42° C., or 5×SSC, 1% SDS, 50 mMTris-HCl (pH 7.5), 50% formamide at 42° C.: The term “high stringentconditions” are, for example, 5×SSC, 5×Denhardt's solution, 0.5% SDS,50% formamide at 50° C. or 0.2×SSC, 0.1% SDS at 65° C. Under theseconditions, polynucleotides with higher homology are expected to beobtained efficiently at higher temperatures, although multiple factorsare involved in hybridization stringency including temperature, probeconcentration, probe length, ionic strength, time, salt concentrationand others, and those skilled in the art may appropriately select thesefactors to achieve similar stringency.

When commercially available kits are used for hybridization, forexample, an Alkphos Direct Labeling and Detection System (GE Healthcare)may be used. In this case, according to the attached protocol, aftercultivation with a labeled probe overnight, the membrane is washed witha primary wash buffer containing 0.1% (w/v) SDS at 55° C., therebydetecting hybridized polynucleotides. Alternatively, in producing aprobe based on the entire or part of the nucleotide sequencecomplementary to the nucleotide sequence of SEQ ID NO: 10, hybridizationcan be detected with a DIG Nucleic Acid Detection Kit (RocheDiagnostics) when the probe is labeled with digoxigenin (DIG) using acommercially available reagent (e.g., a PCR Labeling Mix (RocheDiagnostics), etc.).

In addition to the polynucleotides described above, otherpolynucleotides that can be hybridized include polynucleotides having90% or higher, 91% or higher, 92% or higher, 93% or higher, 94% orhigher, 95% or higher, 96% or higher, 97% or higher, 98% or higher, 99%or higher, 99.1% or higher, 99.2% or higher, 99.3% or higher, 99.4% orhigher, 99.5% or higher, 99.6% or higher, 99.7% or higher, 99.8% orhigher or 99.9% or higher identity with the polynucleotide of SEQ ID NO:10, as calculated by homology search software BLAST using the defaultparameters.

The identity between nucleotide sequences may be determined usingalgorithm BLAST (Basic Local Alignment Search Tool) by Karlin andAltschul (Proc. Natl. Acad. Sci. USA 872264-2268, 1990; Proc. Natl.Acad. Sci. USA 90: 5873, 1993). Programs called BLASTN and BLASTX basedon the BLAST algorithm have been developed (Altschul S F, et al: J. Mol.Biol. 215: 403, 1990). When a nucleotide sequence is sequenced usingBLASTN, the parameters are, for example, score=100 and wordlength=12.When BLAST and Gapped BLAST programs are used, the default parametersfor each program are employed.

The oligomer of the present invention is specifically an antisenseoligomer having a length of 15 to 30 bases wherein two unit oligomersselected from the group consisting of the following (a) and (b) areconnected;

(a) a unit oligomer consisting of a nucleotide sequence complementary toa nucleotide sequence of 7 to 15 consecutive bases selected from thenucleotide sequence represented by SEQ ID NO: 1; and

(b) a unit oligomer consisting of a nucleotide sequence complementary toa nucleotide sequence of 7 to 15 consecutive bases selected from thenucleotide sequence represented by SEQ ID NO: 2.

For example, the first nucleotide sequence may be a nucleotide sequenceof 7 to 15 consecutive bases selected from the nucleotide sequencerepresented by SEQ ID NO: 1, and/or the second nucleotide sequence maybe a nucleotide sequence of 7 to 15 consecutive bases selected from thenucleotide sequence represented by SEQ ID NO: 2.

Preferably, the oligomer of the present invention is an antisenseoligomer having a length of 15 to 30 bases in which two unit oligomersselected from the group consisting of the following (c) to (e) areconnected:

(c) a unit oligomer consisting of a sequence complementary to anucleotide sequence of 7 to 15 consecutive bases selected from thenucleotide sequence represented by SEQ ID NO: 3;

(d) a unit oligomer consisting of a sequence complementary to anucleotide sequence of 7 to 15 consecutive bases selected from thenucleotide sequence represented by SEQ ID NO: 4; and

(e) a unit oligomer consisting of a sequence complementary to anucleotide sequence of 7 to 15 consecutive bases selected from thenucleotide sequence represented by SEQ ID NO: 5.

Herein, the nucleotide sequences represented by SEQ ID NOs: 1 and 2 arethe sequences consisting of the—1 st to the 44th bases and the 58th tothe 115th bases, respectively, from the 5′ end of the nucleotidesequence of exon 44 (SEQ ID NO: 10) in the human wild-type dystrophingene.

The nucleotide sequence represented by SEQ ID NO: 3 is the sequenceconsisting of the 18th to the 34th bases from the 5′ end of thenucleotide sequence of exon 44 (SEQ ID NO: 10) in the human wild-typedystrophin gene. Similarly, the nucleotide sequences represented by SEQID NOs: 4 and 5 are the sequences consisting of the 61st to 77th basesand the 88th to the 104th bases, respectively.

The size of each of the unit oligomers (a) to (e) (hereinafter, alsosimply referred to as “the units”) is a length of 7 to 15 bases and ispreferably a length of 8 to 15 bases, a length of 9 to 15 bases, alength of 10 to 15 bases, a length of 10 to 14 bases, a length of 10 to13 bases or a length of 11 to 13 bases. The units (a) to (e) may havethe same size or may have different sizes.

For selecting two unit oligomers from the group consisting of (a) and(b), the two unit oligomers may be a combination of the same unitoligomers or may be a combination of different unit oligomers.Specifically, the two unit oligomers may be a combination of (a) and (a)or a combination of (b) and (b) or may be a combination of (a) and (b).

For selecting two unit oligomers from the group consisting of (c) to(e), the two unit oligomers may be a combination of the same unitoligomers or may be a combination of different unit oligomers.Preferably, the two units are respectively selected from differenttypes. When, for example, (c) is selected as one unit, the other unit ispreferably (d) or (e). Likewise, when (d) is selected as one unit, theother unit is preferably (c) or (e). Also, when (e) is selected as oneunit, the other unit is preferably (c) or (d).

When the units (a) and (b) are selected, either of the selected twounits may be located on the 5′ side. When the units (a) and (b) areselected, the unit (a) is preferably connected on the 3′ side.

When two units are selected from (c) to (e), either of the selected twounits may be located on the 5′ side. When the units (c) and (d) areselected, the unit (c) is preferably connected on the 3′ side. When theunits (d) and (e) are selected, the unit (d) is preferably connected onthe 3′ side. When the units (c) and (e) are selected, the unit (c) ispreferably connected on the 3′ side.

As used herein, the term “connect” refers to direct binding of two unitsselected from (a) and (b) or two units selected from (c) to (e).Specifically, the term “when two units are connected” means that the 3′end of the unit positioned on the 5′ side and the 5′ end of the unitpositioned on the 3′ side form a phosphate bond or a group shown below.

wherein X represents —OH, —CH₂R¹, —O—CH₂R¹, —S—CH₂R¹, —NR²R³ or F;

R¹ represents H or an alkyl;

R² and R³, which may be the same or different, each represents H, analkyl, a cycloalkyl or an aryl;

Y₁ represents O, S, CH₂ or NR¹;

Y₂ represents O, S or NR¹;

Z represents O or S.

The term “cause skipping of the exon 44 in the human dystrophin gene” isintended to mean that by binding of the oligomer of the presentinvention to the site corresponding to exon 44 of the transcript (e.g.,pre-mRNA) of the human dystrophin gene, for example, thus resulting information of mature mRNA which is free of codon frame shift, thenucleotide sequence corresponding to the 5′ end of exon 46 is spliced atthe nucleotide sequence corresponding to the 3′ end of exon 43 in DMDpatients with deletion of exon 45 when the transcript undergoessplicing.

Herein, the term “binding” described above is intended to mean that whenthe oligomer of the present invention is mixed with the transcript ofhuman dystrophin gene, both are hybridized under physiologicalconditions to form a double strand nucleic acid. The term “underphysiological conditions” refers to conditions set to mimic the in vivoenvironment in terms of pH, salt composition and temperature. Theconditions are, for example, 25 to 40° C., preferably 37° C., pH 5 to 8,preferably pH 7.4 and 150 mM of sodium chloride concentration.

Whether the skipping of exon 44 in the human dystrophin gene is causedor not can be confirmed by introducing the oligomer of the presentinvention into a dystrophin expression cell (e.g., humanrhabdomyosarcoma cells), amplifying the region surrounding exon 44 ofmRNA of the human dystrophin gene from the total RNA of the dystrophinexpression cell by RT-PCR and performing nested PCR or sequence analysison the PCR amplified product.

The skipping efficiency can be determined as follows. The mRNA for thehuman dystrophin gene is collected from test cells; in the mRNA, thepolynucleotide level “A” of the band where exon 44 is skipped and thepolynucleotide level “B” of the band where exon 44 is not skipped aremeasured. Using these measurement values of “A” and “B,” the efficiencyis calculated by the following equation:Skipping efficiency (%)=A/(A+B)×100

Alternatively, for calculation of the efficiency of skipping,International Publication WO2012/029986 may be referred.

Preferably, the antisense oligomer of the present invention causeskipping of the targeted exon (e.g., exon 44) with the efficiency of 10%or higher, 20% or higher, 30% or higher, 40% or higher, 50% or higher,60% or higher, 70% or higher, 80% or higher, or 90% or higher.

The antisense oligomer of the present invention includes, for example,an oligonucleotide, morpholino oligomer or peptide nucleic acid (PNA)oligomer, having a length of 15 to 30 bases. The length is preferablyfrom 16 to 30, from 17 to 30, from 18 to 30, from 19 to 30, from 20 to30, from 20 to 29, from 20 to 28, from 20 to 27, from 20 to 26, from 21to 26, or from 22 to 26 bases and morpholino oligomers are preferred.

The oligonucleotide described above (hereinafter referred to as “theoligonucleotide of the present invention”) is the oligomer of thepresent invention composed of nucleotides as constituent units. Suchnucleotides may be any of ribonucleotides, deoxyribonucleotides andmodified nucleotides.

The modified nucleotide refers to one having fully or partly modifiednucleobases, sugar moieties and/or phosphate-binding regions, whichconstitute the ribonucleotide or deoxyribonucleotide.

The nucleobase includes, for example, adenine, guanine, hypoxanthine,cytosine, thymine, uracil, and modified bases thereof. Examples of suchmodified bases include, but not limited to, pseudouracil,3-methyluracil, dihydrouracil, 5-alkylcytosines (e.g.,5-methylcytosine), 5-alkyluracils (e.g., 5-ethyluracil), 5-halouracils(5-bromouracil), 6-azapyrimidine, 6-alkylpyrimidines (6-methyluracil),2-thiouracil, 4-thiouracil, 4-acetylcytosine, 5-(carboxyhydroxymethyl)uracil, 5′-carboxymethylaminomethyl-2-thiouracil,5-carboxymethylaminomethyluracil, 1-methyladenine, 1-methylhypoxanthine,2,2-dimethylguanine, 3-methylcytosine, 2-methyladenine, 2-methylguanine,N6-methyladenine, 7-methylguanine, 5-methoxyaminomethyl-2-thiouracil,5-methylaminomethyluracil, 5-methylcarbonylmethyluracil,5-methyloxyuracil, 5-methyl-2-thiouracil,2-methylthio-N6-isopentenyladenine, uracil-5-oxyacetic acid,2-thiocytosine, purine, 2,6-diaminopurine, 2-aminopurine, isoguanine,indole, imidazole, xanthine, etc.

Modification of the sugar moiety may include, for example, modificationsat the 2′-position of ribose and modifications of the other positions ofthe sugar. The modification at the 2′-position of ribose includesreplacement of the 2′-OH of ribose with OR, R, R′OR, SH, SR, NH₂, NHR,NR₂, N₃, CN, F, Cl, Br or I, wherein R represents an alkyl or an aryland R′ represents an alkylene.

The modification for the other positions of the sugar includes, forexample, replacement of O at the 4′ position of ribose or deoxyribosewith S, bridging between 2′ and 4′ positions of the sugar, e.g., LNA(Locked Nucleic Acid) or ENA (2′-O,4′-C-Ethylene-bridged Nucleic Acids),but is not limited thereto.

A modification of the phosphate-binding region includes, for example, amodification of replacing phosphodiester bond with phosphorothioatebond, phosphorodithioate bond, alkyl phosphonate bond, phosphoroamidatebond or boranophosphate bond (Enya et al: Bioorganic & MedicinalChemistry, 2008, 18, 9154-9160) (cf., e.g., Japan DomesticRe-Publications of PCT Application Nos. 2006/129594 and 2006/038608).

The alkyl is preferably a straight or branched alkyl having 1 to 6carbon atoms. Specific examples include methyl, ethyl, n-propyl,isopropyl, n butyl, isobutyl, sec-butyl, tert-butyl, n-pentyl,isopentyl, neopentyl, tert-pentyl, n-hexyl and isohexyl. The alkyl mayoptionally be substituted. Examples of such substituents are a halogen,an alkoxy, cyano and nitro. The alkyl may be substituted with one tothree of such substituents.

The cycloalkyl is preferably a cycloalkyl having 5 to 12 carbon atoms.Specific examples include cyclopentyl, cyclohexyl, cycloheptyl,cyclooctyl, cyclodecyl and cyclododecyl.

The halogen includes fluorine, chlorine, bromine and iodine.

The alkoxy is a straight or branched alkoxy having 1 to 6 carbon atomssuch as methoxy, ethoxy, n-propoxy, isopropoxy, n-butoxy, isobutoxy,sec-butoxy, tert-butoxy, n-pentyloxy, isopentyloxy, n-hexyloxy,isohexyloxy, etc. Among others, an alkoxy having 1 to 3 carbon atoms ispreferred.

The aryl is preferably an aryl having 6 to 10 carbon atoms. Specificexamples include phenyl, α-naphthyl and β-naphthyl. Among others, phenylis preferred. The aryl may optionally be substituted. Examples of suchsubstituents are an alkyl, a halogen, an alkoxy, cyano and nitro. Thearyl may be substituted with one to three of such substituents.

In this invention, the alkylene is preferably a straight or branchedalkylene having 1 to 6 carbon atoms. Specific examples includemethylene, ethylene, trimethylene, tetramethylene, pentamethylene,hexamethylene, 2-(ethyl) trimethylene and 1-(methyl) tetramethylene.

The acyl includes a straight or branched alkanoyl or aroyl. Examples ofthe alkanoyl include formyl, acetyl, 2-methylacetyl, 2,2-dimethylacetyl,propionyl, butyryl, isobutyryl, pentanoyl, 2,2-dimethylpropionyl,hexanoyl, etc. Examples of the aroyl include benzoyl, toluoyl andnaphthoyl. The aroyl may optionally be substituted at substitutablepositions and may be substituted with an alkyl(s).

Preferably, the oligonucleotide of the present invention is the oligomerof the present invention containing a constituent unit represented bygeneral formula below wherein the —OH group at position 2′ of ribose issubstituted with methoxy and the phosphate-binding region is aphosphorothioate bond:

wherein Base represents a nucleobase.

The oligonucleotide of the present invention may be easily synthesizedusing various automated synthesizer (e.g., AKTA oligopilot plus 10/100(GE Healthcare)). Alternatively, the synthesis may also be entrusted toa third-party organization (e.g., Promega Inc. or Takara Co.), etc.

The morpholino oligomer described above is the oligomer of the presentinvention comprising the constituent unit represented by general formulabelow:

wherein Base has the same significance as defined above, and,W represents a group shown by any one of the following groups:

wherein X represents —CH₂R¹, —O—CH₂R¹, —S—CH₂R¹, —NR²R³ or F;

R¹ represents H or an alkyl;

R² and R³, which may be the same or different, each represents H, analkyl, a cycloalkyl or an aryl;

Y₁ represents O, S, CH₂ or NR¹;

Y₂ represents O, S or NR¹;

Z represents O or S.

Preferably, the morpholino oligomer is an oligomer comprising aconstituent unit represented by general formula below(phosphorodiamidate morpholino oligomer (hereinafter referred to as“PMO”)).

wherein Base, R² and R³ have the same significance as defined above.

The morpholino oligomer may be produced in accordance with, e.g., WO1991/009033 or WO 2009/064471. In particular, PMO can be produced by theprocedure described in WO 2009/064471 or WO2013/100190.

[Method for Producing PMO]

An embodiment of PMO is, for example, the compound represented bygeneral formula (I) below (hereinafter PMO (I)).

wherein Base, R² and R³ have the same significance as defined above;and,

n is a given integer of 1 to 99, preferably a given integer of 18 to 28.

PMO (I) can be produced in accordance with a known method, for example,can be produced by performing the procedures in the following steps.

The compounds and reagents used in the steps below are not particularlylimited so long as they are commonly used to prepare PMO.

Also, the following steps can all be carried out by the liquid phasemethod or the solid phase method (using manuals or commerciallyavailable solid phase automated synthesizers). In producing PMO by thesolid phase method, it is desired to use automated synthesizers in viewof simple operation procedures and accurate synthesis.

(1) Step A:

The compound represented by general formula (II) below (hereinafterreferred to as Compound (II)) is reacted with an acid to prepare thecompound represented by general formula (III) below (hereinafterreferred to as Compound (III)):

wherein n, R² and R³ have the same significance as defined above;each B^(P) independently represents a nucleobase which may optionally beprotected;T represents trityl, monomethoxytrityl or dimethoxytrityl; and,L represents hydrogen, an acyl or a group represented by general formula(IV) below (hereinafter referred to as group (IV)).

The “nucleobase” for B^(P) includes the same “nucleobase” as in Base,provided that the amino or hydroxy group in the nucleobase shown byB^(P) may be protected.

Such protective group for amino is not particularly limited so long asit is used as a protective group for nucleic acids. Specific examplesinclude benzoyl, 4-methoxybenzoyl, acetyl, propionyl, butyryl,isobutyryl, phenylacetyl, phenoxyacetyl, 4-tert-butylphenoxyacetyl,4-isopropylphenoxyacetyl and (dimethylamino)methylene. Specific examplesof the protective group for the hydroxy group include 2-cyanoethyl,4-nitrophenethyl, phenylsulfonylethyl, methylsulfonylethyl andtrimethylsilylethyl, and phenyl, which may be substituted by 1 to 5electron-withdrawing group at optional substitutable positions,diphenylcarbamoyl, dimethylcarbamoyl, diethylcarbamoyl,methylphenylcarbamoyl, 1-pyrolidinylcarbamoyl, morpholinocarbamoyl,4-(tert-butylcarboxy) benzyl, 4-[(dimethylamino)carboxy]benzyl and4-(phenylcarboxy)benzyl, (cf., e.g., WO 2009/064471).

The “solid carrier” is not particularly limited so long as it is acarrier usable for the solid phase reaction of nucleic acids. It isdesired for the solid carrier to have the following properties: e.g.,(i) it is sparingly soluble in reagents that can be used for thesynthesis of morpholino nucleic acid derivatives (e.g., dichloromethane,acetonitrile, tetrazole, N-methylimidazole, pyridine, acetic anhydride,lutidine, trifluoroacetic acid); (ii) it is chemically stable to thereagents usable for the synthesis of morpholino nucleic acidderivatives; (iii) it can be chemically modified; (iv) it can be chargedwith desired morpholino nucleic acid derivatives; (v) it has a strengthsufficient to withstand high pressure through treatments; and (vi) ithas a uniform particle diameter range and distribution. Specifically,swellable polystyrene (e.g., aminomethyl polystyrene resin 1%dibenzylbenzene crosslinked (200-400 mesh) (2.4-3.0 mmol/g)(manufactured by Tokyo Chemical Industry), Aminomethylated PolystyreneResin-HCl [dibenzylbenzene 1%, 100-200 mesh] (manufactured by PeptideInstitute, Inc.)), non-swellable polystyrene (e.g., Primer Support(manufactured by GE Healthcare)), PEG chain-attached polystyrene (e.g.,NH₂-PEG resin (manufactured by Watanabe Chemical Co.), TentaGel resin),controlled pore glass (controlled pore glass; CPG) (manufactured by,e.g., CPG), oxalyl-controlled pore glass (cf., e.g., Alul et al.,Nucleic Acids Research, Vol. 19, 1527 (1991)), TentaGelsupport-aminopolyethylene glycol-derivatized support (e.g., Wright etal., cf., Tetrahedron Letters, Vol. 34, 3373 (1993)), and a copolymer ofPoros-polystyrene/divinylbenzene.

A “linker” which can be used is a known linker generally used to connectnucleic acids or morpholino nucleic acid derivatives. Examples include3-aminopropyl, succinyl, 2,2′-diethanolsulfonyl and a long chain alkylamino (LCAA).

This step can be performed by reacting Compound (II) with an acid.

The “acid” which can be used in this step includes, for example,trifluoroacetic acid, dichloroacetic acid and trichloroacetic acid. Theacid used is appropriately in a range of, for example, 0.1 molequivalent to 1000 mol equivalents based on 1 mol of Compound (II),preferably in a range of 1 mol equivalent to 100 mol equivalents basedon 1 mol of Compound (II).

An organic amine can be used in combination with the acid describedabove. The organic amine is not particularly limited and includes, forexample, triethylamine. The amount of the organic amine used isappropriately in a range of, e.g., 0.01 mol equivalent to 10 molequivalents, and preferably in a range of 0.1 mol equivalent to 2 molequivalents, based on 1 mol of the acid.

When a salt or mixture of the acid and the organic amine is used in thisstep, the salt or mixture includes, for example, a salt or mixture oftrifluoroacetic acid and triethylamine, and more specifically, a mixtureof 1 equivalent of triethylamine and 2 equivalents of trifluoroaceticacid.

The acid which can be used in this step may also be used in the form ofa dilution with an appropriate solvent in a concentration of 0.1% to30%. The solvent is not particularly limited as far as it is inert tothe reaction, and includes, for example, dichloromethane, acetonitrile,an alcohol (ethanol, isopropanol, trifluoroethanol, etc.), water, or amixture thereof.

The reaction temperature in the reaction described above is preferablyin a range of, e.g., 10° C. to 50° C., more preferably, in a range of20° C. to 40° C., and most preferably, in a range of 25° C. to 35° C.

The reaction time may vary depending upon kind of the acid used andreaction temperature, and is appropriately in a range of 0.1 minute to24 hours in general, and preferably in a range of 1 minute to 5 hours.

After completion of this step, a base may be added, if necessary, toneutralize the acid remained in the system. The “base” is notparticularly limited and includes, for example, diisopropylamine. Thebase may also be used in the form of a dilution with an appropriatesolvent in a concentration of 0.1% (v/v) to 30% (v/v).

The solvent used in this step is not particularly limited so long as itis inert to the reaction, and includes dichloromethane, acetonitrile, analcohol (ethanol, isopropanol, trifluoroethanol, etc.), water, and amixture thereof. The reaction temperature is preferably in a range of,e.g., 10° C. to 50° C., more preferably, in a range of 20° C. to 40° C.,and most preferably, in a range of 25° C. to 35° C.

The reaction time may vary depending upon kind of the base used andreaction temperature, and is appropriately in a range of 0.1 minute to24 hours in general, and preferably in a range of 1 minute to 5 hours.

In Compound (II), the compound of general formula (IIa) below(hereinafter Compound (IIa)), wherein n is 1 and L is a group (IV), canbe produced by the following procedure.

wherein B^(P), T, linker and solid carrier have the same significance asdefined above.Step 1:

The compound represented by general formula (V) below is reacted with anacylating agent to prepare the compound represented by general formula(VI) below (hereinafter referred to as Compound (VI)).

wherein B^(P), T and linker have the same significance as defined above;and,R⁴ represents hydroxy, a halogen, carboxyl group or amino.

This step can be carried out by known procedures for introducinglinkers, using Compound (V) as the starting material.

In particular, the compound represented by general formula (VIa) belowcan be produced by performing the method known as esterification, usingCompound (V) and succinic anhydride.

wherein B^(P) and T have the same significance as defined above.Step 2:

Compound (VI) is reacted with a solid career by a condensing agent toprepare Compound (IIa).

wherein B^(P), R⁴, T, linker and solid carrier have the samesignificance as defined above.

This step can be performed using Compound (VI) and a solid carrier inaccordance with a process known as condensation reaction.

In Compound (II), the compound represented by general formula (IIa2)below wherein n is 2 to 99 and L is a group represented by generalformula (IV) can be produced by using Compound (IIa) as the startingmaterial and repeating step A and step B of the PMO production methoddescribed in the specification for a desired number of times.

wherein B^(P), R², R³, T, linker and solid carrier have the samesignificance as defined above; and,n′ represents 1 to 98.

In Compound (II), the compound of general formula (IIb) below wherein nis 1 and L is hydrogen can be produced by the procedure described in,e.g., WO 1991/009033.

wherein B^(P) and T have the same significance as defined above.

In Compound (II), the compound represented by general formula (IIb2)below wherein n is 2 to 99 and L is hydrogen can be produced by usingCompound (IIb) as the starting material and repeating step A and step Bof the PMO production method described in the specification for adesired number of times.

wherein B^(P), n′, R², R³ and T have the same significance as definedabove.

In Compound (II), the compound represented by general formula (IIc)below wherein n is 1 and L is an acyl can be produced by performing theprocedure known as acylation reaction, using Compound (IIb).

wherein B^(P) and T have the same significance as defined above; and,R⁵ represents an acyl.

In Compound (II), the compound represented by general formula (IIc2)below wherein n is 2 to 99 and L is an acyl can be produced by usingCompound (IIc) as the starting material and repeating step A and step Bof the PMO production method described in the specification for adesired number of times.

wherein B^(P), n′, R², R³, R⁵ and T have the same significance asdefined above.(2) Step B

Compound (III) is reacted with a morpholino monomer compound in thepresence of a base to prepare the compound represented by generalformula (VII) below (hereinafter referred to as Compound (VII)):

wherein B^(P), L, n, R², R³ and T have the same significance as definedabove.

This step can be performed by reacting Compound (III) with a morpholinomonomer compound in the presence of a base.

The morpholino monomer compound includes, for example, compoundsrepresented by general formula (VIII) below:

wherein B^(P), R², R³ and T have the same significance as defined above.

The “base” which can be used in this step includes, for example,diisopropylamine, triethylamine and N-ethylmorpholine. The amount of thebase used is appropriately in a range of 1 mol equivalent to 1000 molequivalents based on 1 mol of Compound (III), preferably, 10 molequivalents to 100 mol equivalents based on 1 mol of Compound (III).

The morpholino monomer compound and base which can be used in this stepmay also be used as a dilution with an appropriate solvent in aconcentration of 0.1% to 30%. The solvent is not particularly limited asfar as it is inert to the reaction, and includes, for example,N,N-dimethylimidazolidone, N-methylpiperidone, DMF, dichloromethane,acetonitrile, tetrahydrofuran, or a mixture thereof.

The reaction temperature is preferably in a range of, e.g., 0° C. to100° C., and more preferably, in a range of 10° C. to 50° C.

The reaction time may vary depending upon kind of the base used andreaction temperature, and is appropriately in a range of 1 minute to 48hours in general, and preferably in a range of 30 minutes to 24 hours.

Furthermore, after completion of this step, an acylating agent can beadded, if necessary. The “acylating agent” includes, for example, aceticanhydride, acetyl chloride and phenoxyacetic anhydride. The acylatingagent may also be used as a dilution with an appropriate solvent in aconcentration of 0.1% to 30%. The solvent is not particularly limited asfar as it is inert to the reaction, and includes, for example,dichloromethane, acetonitrile, an alcohol(s) (ethanol, isopropanol,trifluoroethanol, etc.), water, or a mixture thereof.

If necessary, a base such as pyridine, lutidine, collidine,triethylamine, diisopropylethylamine, N-ethylmorpholine, etc. may alsobe used in combination with the acylating agent. The amount of theacylating agent is appropriately in a range of 0.1 mol equivalent to10000 mol equivalents, and preferably in a range of 1 mol equivalent to1000 mol equivalents. The amount of the base is appropriately in a rangeof, e.g., 0.1 mol equivalent to 100 mol equivalents, and preferably in arange of 1 mol equivalent to 10 mol equivalents, based on 1 mol of theacylating agent.

The reaction temperature in this reaction is preferably in a range of10° C. to 50° C., more preferably, in a range of 10° C. to 50° C., muchmore preferably, in a range of 20° C. to 40° C., and most preferably, ina range of 25° C. to 35° C. The reaction time may vary depending uponkind of the acylating agent used and reaction temperature, and isappropriately in a range of 0.1 minute to 24 hours in general, andpreferably in a range of 1 minute to 5 hours.

(3) Step C:

In Compound (VII) produced in Step B, the protective group is removedusing a deprotecting agent to prepare the compound represented bygeneral formula (IX).

wherein Base, B^(P), L, n, R², R³ and T have the same significance asdefined above.

This step can be performed by reacting Compound (VII) with adeprotecting agent.

The “deprotecting agent” includes, e.g., conc. ammonia water andmethylamine. The “deprotecting agent” used in this step may also be usedas a dilution with, e.g., water, methanol, ethanol, isopropyl alcohol,acetonitrile, tetrahydrofuran, DMF, N,N-dimethylimidazolidone,N-methylpiperidone, or a mixture of these solvents. Among them, ethanolis preferred. The amount of the deprotecting agent used is appropriatelyin a range of, 1 mol equivalent to 100000 mol equivalents, andpreferably in a range of 10 mol equivalents to 1000 mol equivalents,based on 1 mol of Compound (VII).

The reaction temperature is appropriately in a range of 15° C. to 75°C., preferably, in a range of 40° C. to 70° C., and more preferably, ina range of 50° C. to 60° C. The reaction time for deprotection may varydepending upon kind of Compound (VII), reaction temperature, etc., andis appropriately in a range of 10 minutes to 30 hours, preferably 30minutes to 24 hours, and more preferably in a range of 5 hours to 20hours.

(4) Step D:

PMO (I) is produced by reacting Compound (IX) produced in step C with anacid:

wherein Base, n, R², R³ and T have the same significance as definedabove.

This step can be performed by adding an acid to Compound (IX).

The “acid” which can be used in this step includes, for example,trichloroacetic acid, dichloroacetic acid, acetic acid, phosphoric acid,hydrochloric acid, etc. The acid used is appropriately used to allow thesolution to have a pH range of 0.1 to 4.0, and more preferably, in arange of pH 1.0 to 3.0. The solvent is not particularly limited so longas it is inert to the reaction, and includes, for example, acetonitrile,water, or a mixture of these solvents thereof.

The reaction temperature is appropriately in a range of 10° C. to 50°C., preferably, in a range of 20° C. to 40° C., and more preferably, ina range of 25° C. to 35° C. The reaction time for deprotection may varydepending upon kind of Compound (IX), reaction temperature, etc., and isappropriately in a range of 0.1 minute to 5 hours, preferably 1 minuteto 1 hour, and more preferably in a range of 1 minute to 30 minutes.

PMO (I) can be obtained by subjecting the reaction mixture obtained inthis step to conventional means of separation and purification such asextraction, concentration, neutralization, filtration, centrifugalseparation, recrystallization, reversed phase column chromatography C₈to C₁₈, cation exchange column chromatography, anion exchange columnchromatography, gel filtration column chromatography, high performanceliquid chromatography, dialysis, ultrafiltration, etc., alone or incombination thereof. Thus, the desired PMO (I) can be isolated andpurified (cf., e.g., WO 1991/09033).

In purification of PMO (I) using reversed phase chromatography, e.g., asolution mixture of 20 mM triethylamine/acetate buffer and acetonitrilecan be used as an elution solvent.

In purification of PMO (I) using ion exchange chromatography, e.g., asolution mixture of 1 M saline solution and 10 mM sodium hydroxideaqueous solution can be used as an elution solvent.

The peptide nucleic acid described above is the oligomer of the presentinvention having a group represented by the following general formula asthe constituent unit:

wherein Base has the same significance as defined above.

Peptide nucleic acids can be prepared by referring to, e.g., thefollowing literatures.

-   1) P. E. Nielsen, M. Egholm, R. H. Berg, O. Buchardt, Science, 254,    1497 (1991)-   2) M. Egholm, O. Buchardt, P. E. Nielsen, R. H. Berg, Jacs., 114,    1895 (1992)-   3) K. L. Dueholm, M. Egholm, C. Behrens, L. Christensen, H. F.    Hansen, T. Vulpius, K. H. Petersen, R. H. Berg, P. E. Nielsen, O.    Buchardt, J. Org. Chem., 59, 5767 (1994)-   4) L. Christensen, R. Fitzpatrick, B. Gildea, K. H. Petersen, H. F.    Hansen, T. Koch, M. Egholm, O. Buchardt, P. E. Nielsen, J.    Coull, R. H. Berg, J. Pept. Sci., 1, 175 (1995)-   5) T. Koch, H. F. Hansen, P. Andersen, T. Larsen, H. G. Batz, K.    Otteson, H. Orum, J. Pept. Res., 49, 80 (1997)

In the oligomer of the present invention, the 5′ end may be any ofchemical structures (1) to (3) below, and preferably is (3)-OH.

Hereinafter, the groups shown by (1), (2) and (3) above are referred toas “Group (1),” “Group (2)” and “Group (3),” respectively.

2. Pharmaceutical Composition

The oligomer of the present invention causes skipping of exon 44 in thedystrophin gene. It is thus expected that conditions of musculardystrophy can be relieved by administering the pharmaceuticalcomposition comprising the oligomer of the present invention to DMDpatients, who has target mutation of exon 44 skipping, that is mutationconverting to in-frame by Exon 44 skipping. Also, the manufacturingprocess of the oligomer of the present invention, whose chain length isshort, is simple and the manufacturing cost of the oligomer of thepresent invention can be reduced.

In another embodiment, the present invention provides the pharmaceuticalcomposition for the treatment of muscular dystrophy, comprising as anactive ingredient the oligomer of the present invention, apharmaceutically acceptable salt or hydrate thereof (hereinafterreferred to as “the composition of the present invention”)

Examples of the pharmaceutically acceptable salt of the oligomer of thepresent invention contained in the composition of the present inventionare alkali metal salts such as salts of sodium, potassium and lithium;alkaline earth metal salts such as salts of calcium and magnesium; metalsalts such as salts of aluminum, iron, zinc, copper, nickel, cobalt,etc.; ammonium salts; organic amine salts such as salts of t-octylamine,dibenzylamine, morpholine, glucosamine, phenylglycine alkyl ester,ethylenediamine, N-methylglucamine, guanidine, diethylamine,triethylamine, dicyclohexylamine, N, N′-dibenzylethylenediamine,chloroprocaine, procaine, diethanolamine, N-benzylphenethylamine,piperazine, tetramethylammonium, tris(hydroxymethyl)aminomethane;hydrohalide salts such as salts of hydrofluorates, hydrochlorides,hydrobromides and hydroiodides; inorganic acid salts such as nitrates,perchlorates, sulfates, phosphates, etc.; lower alkane sulfonates suchas methanesulfonates, trifluoromethanesulfonates and ethanesulfonates;arylsulfonates such as benzenesulfonates and p-toluenesulfonates;organic acid salts such as acetates, malates, fumarates, succinates,citrates, tartarates, oxalates, maleates, etc.; and, amino acid saltssuch as salts of glycine, lysine, arginine, ornithine, glutamic acid andaspartic acid. These salts may be produced by known methods.Alternatively, the oligomer of the present invention contained in thecomposition of the present invention may be in the form of a hydratethereof.

Administration route for the composition of the present invention is notparticularly limited so long as it is pharmaceutically acceptable routefor administration, and can be chosen depending upon method oftreatment. In view of easiness in delivery to muscle tissues, preferredare intravenous administration, intraarterial administration,intramuscular administration, subcutaneous administration, oraladministration, tissue administration, transdermal administration, etc.Also, dosage forms which are available for the composition of thepresent invention are not particularly limited, and include, forexample, various injections, oral agents, drips, inhalations, ointments,lotions, etc.

In administration of the oligomer of the present invention to patientswith muscular dystrophy, the composition of the present inventionpreferably contains a carrier to promote delivery of the oligomer tomuscle tissues. Such a carrier is not particularly limited as far as itis pharmaceutically acceptable, and examples include cationic carrierssuch as cationic liposomes, cationic polymers, etc., or carriers usingviral envelope. The cationic liposomes are, for example, liposomescomposed of 2-O-(2-diethylaminoethyl)carabamoyl-1,3-O-dioleoylglyceroland phospholipids as the essential constituents (hereinafter referred toas “liposome A”), Oligofectamine (registered trademark) (manufactured byInvitrogen Corp.), Lipofectin (registered trademark) (manufactured byInvitrogen Corp.), Lipofectamine (registered trademark) (manufactured byInvitrogen Corp.), Lipofectamine 2000 (registered trademark)(manufactured by Invitrogen Corp.), DMRIE-C (registered trademark)(manufactured by Invitrogen Corp.), GeneSilencer (registered trademark)(manufactured by Gene Therapy Systems), TransMessenger (registeredtrademark) (manufactured by QIAGEN, Inc.), TransIT TKO (registeredtrademark) (manufactured by Mirus) and Nucleofector II (Lonza). Amongothers, liposome A is preferred. Examples of cationic polymers are JetSI(registered trademark) (manufactured by Qbiogene, Inc.) and Jet-PEI(registered trademark) (polyethylenimine, manufactured by Qbiogene,Inc.). An example of carriers using viral envelop is GenomeOne(registered trademark) (HVJ-E liposome, manufactured by IshiharaSangyo). Alternatively, the medical devices described in Japanese PatentNo. 2924179 and the cationic carriers described in Japanese DomesticRe-Publication PCT Nos. 2006/129594 and 2008/096690 may be used as well.

A concentration of the oligomer of the present invention contained inthe composition of the present invention may vary depending on kind ofthe carrier, etc., and is appropriately in a range of 0.1 nM to 100 μM,preferably in a range of 1 nM to 10 μM, and more preferably in a rangeof 10 nM to 1 μM. A weight ratio of the oligomer of the presentinvention contained in the composition of the present invention and thecarrier (carrier/oligomer of the present invention) may vary dependingon property of the oligomer, type of the carrier, etc., and isappropriately in a range of 0.1 to 100, preferably in a range of 1 to50, and more preferably in a range of 10 to 20.

In addition to the oligomer of the present invention and the carrierdescribed above, pharmaceutically acceptable additives may also beoptionally formulated in the composition of the present invention.Examples of such additives are emulsification aids (e.g., fatty acidshaving 6 to 22 carbon atoms and their pharmaceutically acceptable salts,albumin and dextran), stabilizers (e.g., cholesterol and phosphatidicacid), isotonizing agents (e.g., sodium chloride, glucose, maltose,lactose, sucrose, trehalose), and pH controlling agents (e.g.,hydrochloric acid, sulfuric acid, phosphoric acid, acetic acid, sodiumhydroxide, potassium hydroxide and triethanolamine). One or more ofthese additives can be used. The content of the additive in thecomposition of the present invention is appropriately 90 wt % or less,preferably 70 wt % or less and more preferably, 50 wt % or less.

The composition of the present invention can be prepared by adding theoligomer of the present invention to a carrier dispersion and adequatelystirring the mixture. Additives may be added at an appropriate stepeither before or after addition of the oligomer of the presentinvention. An aqueous solvent that can be used in adding the oligomer ofthe present invention is not particularly limited as far as it ispharmaceutically acceptable, and examples are injectable water orinjectable distilled water, electrolyte fluid such as physiologicalsaline, etc., and sugar fluid such as glucose fluid, maltose fluid, etc.A person skilled in the art can appropriately choose conditions for pHand temperature for such matter.

The composition of the present invention may be prepared into, e.g., aliquid form and its lyophilized preparation. The lyophilized preparationcan be prepared by lyophilizing the composition of the present inventionin a liquid form in a conventional manner. The lyophilization can beperformed, for example, by appropriately sterilizing the composition ofthe present invention in a liquid form, dispensing an aliquot into avial container, performing preliminary freezing for 2 hours atconditions of about −40 to −20° C., performing a primary drying at about0 to 10° C. under reduced pressure, and then performing a secondarydrying at about 15 to 25° C. under reduced pressure. In general, thelyophilized preparation of the composition of the present invention canbe obtained by replacing the content of the vial with nitrogen gas andcapping.

The lyophilized preparation of the composition of the present inventioncan be used in general upon reconstitution by adding an optionalsuitable solution (reconstitution liquid) and redissolving thepreparation. Such a reconstitution liquid includes injectable water,physiological saline and other infusion fluids. A volume of thereconstitution liquid may vary depending on the intended use, etc., isnot particularly limited, and is suitably 0.5 to 2-fold greater than thevolume prior to lyophilization or no more than 500 mL.

It is desired to control a dose of the composition of the presentinvention to be administered, by taking the following factors intoaccount: the type and dosage form of the oligomer of the presentinvention contained; patients' conditions including age, body weight,etc.; administration route; and the characteristics and extent of thedisease. A daily dose calculated as the amount of the antisense oligomerof the present invention is generally in a range of 0.1 mg to 10g/human, and preferably 1 mg to 1 g/human. This numerical range may varyoccasionally depending on type of the target disease, administrationroute and target molecule. Therefore, a dose lower than the range may besufficient in some occasion and conversely, a dose higher than the rangemay be required occasionally. The composition can be administered fromonce to several times daily or at intervals from one day to severaldays.

In still another embodiment of the composition of the present invention,there is provided a pharmaceutical composition comprising a vectorcapable of expressing the oligonucleotide of the present invention andthe carrier described above. Such an expression vector may be a vectorcapable of expressing a plurality of the oligonucleotides of the presentinvention. The composition may be formulated with pharmaceuticallyacceptable additives as in the case with the composition of the presentinvention containing the oligomer of the present invention. Aconcentration of the expression vector contained in the composition mayvary depending upon type of the career, etc., and is appropriately in arange of 0.1 nM to 100 μM, preferably in a range of 1 nM to 10 μM, andmore preferably in a range of 10 nM to 1 μM. A weight ratio of theexpression vector contained in the composition and the carrier(carrier/expression vector) may vary depending on property of theexpression vector, type of the carrier, etc., and is appropriately in arange of 0.1 to 100, preferably in a range of 1 to 50, and morepreferably in a range of 10 to 20. The content of the carrier containedin the composition is the same as in the case with the composition ofthe present invention containing the oligomer of the present invention,and a method for producing the same is also the same as in the case withthe composition of the present invention.

Hereinafter, the present invention will be described in more detail withreference to EXAMPLES and TEST EXAMPLES below, but is not deemed to belimited thereto.

EXAMPLES Reference Example 1 4-{[(2S,6R)-6-(4-Benzamido-2-oxopyrimidin-1-yl)-4-tritylmorpholin-2-yl]methoxy}-4-oxobutanoic Acid Loaded onto Amino Polystyrene Resin Step 1:Production of 4-{[(2S,6R)-6-(4-benzamido-2-oxopyrimidin-1(2H)-yl)-4-tritylmorpholin-2-yl]methoxy}-4-oxobutanoic Acid

Under argon atmosphere, 3.44 g of N-{1-[(2R,6S)-6-(hydroxymethyl)-4-tritylmorpholin-2-yl]-2-oxo-1,2-dihydropyrimidin-4-yl}benzamideand 1.1 g of 4-dimethylaminopyridine (4-DMAP) were suspended in 50 mL ofdichloromethane, and 0.90 g of succinic anhydride was added to thesuspension, followed by stirring at room temperature for 3 hours. To thereaction mixture was added 10 mL of methanol, and the mixture wasconcentrated under reduced pressure. The residue was extracted usingethyl acetate and 0.5 M aqueous potassium dihydrogenphosphate solution.The resulting organic layer was washed sequentially with 0.5M aqueouspotassium dihydrogenphosphate solution, water and brine in the ordermentioned. The resulting organic layer was dried over sodium sulfate andconcentrated under reduced pressure to give 4.0 g of the product.

Step 2; Production of4-{[(2S,6R)-6-(4-benzamido-2-oxopyrimidin-1-yl)-4-tritylmorpholin-2-yl]methoxy}-4-oxobutanoicAcid Loaded onto Amino Polystyrene Resin

After 4.0 g of4-{[(2S,6R)-6-(4-benzamido-2-oxopyrimidin-1(2H)-yl)-4-tritylmorpholin-2-yl]methoxy}-4-oxobutanoicacid was dissolved in 200 mL of pyridine (dehydrated), 0.73 g of 4-DMAPand 11.5 g of 1-ethyl-3-(3-dimethylaminopropyl)carbodiimidehydrochloride were added to the solution. Then, 25.0 g of aminopolystyrene resin Primer support 200 amino (manufactured by GEHealthcare Japan Co., Ltd., 17-5214-97) and 8.5 mL of triethylamine wereadded to the mixture, followed by shaking at room temperature for 4days. After completion of the reaction, the resin was taken out byfiltration. The resulting resin was washed sequentially with pyridine,methanol and dichloromethane in the order mentioned, and dried underreduced pressure. To the resulting resin were added 200 mL oftetrahydrofuran (dehydrate), 15 mL of acetic anhydride and 15 mL of2,6-lutidine, and the mixture was shaken at room temperature for 2hours. The resin was taken out by filtration, washed sequentially withpyridine, methanol and dichloromethane in the order mentioned and driedunder reduced pressure to give 26.7 g of the product.

The loading amount of the product was determined from the molar amountof the trityl per g resin by measuring UV absorbance at 409 nm using aknown method. The loading amount of the resin was 192.2 μmol/g.

Conditions of UV Measurement

Apparatus: U-2910 (Hitachi, Ltd.)

Solvent: methanesulfonic acid

Wavelength: 265 nm

ε value: 45000

Reference Example 2 4-{[(2S,6R)-6-(5-methyl-2,4-dioxopyrimidine-1-yl)-4-tritylmorpholin-2-yl]methoxy}-4-oxobutanoicAced Loaded onto Amino Polystyrene Resin

The title compound was produced in a manner similar to REFERENCE EXAMPLE1, except that1-[(2R,6S)-6-(hydroxymethyl)-4-tritylmorpholin-2-yl]-5-methylpyrimidine-2,4(1H,3H)-dione was used in this step, instead ofN-{1-[(2R,6S)-6-(hydroxymethyl)-4-tritylmorpholin-2-yl]-2-oxo-1,2-dihydropyrimidin-4-yl}benzamideused in Step 1 of REFERENCE EXAMPLE 1.

The loading amount of the product was determined from the molar amountof the trityl per g resin by measuring UV absorbance at 409 nm using aknown method. The loading amount of the resin was 164.0 μmol/g.

Reference Example 3 4-{[(2S, 6R)-6-(6-benzamidopurine-9-yl)-4-tritylmorpholin-2-yl] methoxy}-4-oxobutanoic Aced Loadedonto Amino Polystyrene Resin

The title compound was produced in a manner similar to REFERENCE EXAMPLE1, except that N-{9-[(2R,6S)-6-(hydroxymethyl)-4-tritylmorpholin-2-yl]purine-6-yl} benzamido was used in this step, instead ofN-{1-[(2R,6S)-6-(hydroxymethyl)-4-tritylmorpholin-2-yl]-2-oxo-1,2-dihydropyrimidin-4-yl}benzamideused in Step 1 of REFERENCE EXAMPLE 1.

The loading amount of the product was determined from the molar amountof the trityl per g resin by measuring UV absorbance at 409 nm using aknown method. The loading amount of the resin was 185.7 μmol/g.

Reference Example 4 4-{{(2S,6R)-6-{6-2-cyanoethoxy}-2-[(2-phenoxyacetyl) amino]purine-9-yl}-4-tritylmorpholin-2-yl}methoxy}-4-oxobutanoic Aced Loadedonto Amino Polystyrene Resin

The title compound was produced in a manner similar to REFERENCE EXAMPLE1, except thatN-{6-(2-cyanoethoxy)-9-[(2R,6S)-6-(hydroxymethyl)-4-tritylmorpholin-2-yl]purine-2-yl}-2-phenoxyacetoamido was used in this step, instead ofN-{1-[(2R,6S)-6-(hydroxymethyl)-4-tritylmorpholin-2-yl]-2-oxo-1,2-dihydropyrimidin-4-yl}benzamide used in Step 1 of REFERENCE EXAMPLE 1.

The loading amount of the product was determined from the molar amountof the trityl per g resin by measuring UV absorbance at 409 nm using aknown method. The loading amount of the resin was 164.8 μmol/g.

According to the descriptions in EXAMPLES 1 below, PMO shown by PMO Nos.1-118 in TABLE 1 were synthesized. PMO Nos. 119 and 120 were purchasedfrom Gene Tools, LLC. The synthesized PMO was dissolved in water forinjection (manufactured by Otsuka Pharmaceutical Factory, Inc.).

TABLE 1-1 TABLE 1 PMO Target sequence SEQ ID No. positioned in exon 44Note NO: 1 11-23 & 91-103 5′ end: group (3) 11 2 11-23 & 61-73 5′ end:group (3) 12 3 11-23 & 71-83 5′ end: group (3) 13 4 21-33 & 91-103 5′end: group (3) 14 5 21-33 & 81-93 5′ end: group (3) 15 6 21-33 & 101-1135′ end: group (3) 16 7 21-33 & 61-73 5′ end: group (3) 17 8 21-33 &71-83 5′ end: group (3) 18 9 21-35 & 101-115 5′ end: group (3) 19 1011-25 & 91-105 5′ end: group (3) 20 11 16-25 & 101-115 5′ end: group (3)21 12 21-35 & 91-105 5′ end: group (3) 22 13 11-23 & 101-113 5′ end:group (3) 23 14 23-35 & 91-103 5′ end: group (3) 24 15 19-31 & 91-103 5′end: group (3) 25 16 21-33 & 89-101 5′ end: group (3) 26 17 11-23 &81-93 5′ end: group (3) 27 18 19-31 & 93-105 5′ end: group (3) 28 1923-35 & 89-101 5′ end: group (3) 29 20 23-35 & 93-105 5′ end: group (3)30 21 22-33 & 92-103 5′ end: group (3) 31 22 91-103 & 21-33 5′ end:group (3) 32 23 22-32 & 92-102 5′ end: group (3) 33 24 22-31 & 93-102 5′end: group (3) 34 25 19-31 & 59-71 5′ end: group (3) 35 26 21-33 &93-105 5′ end: group (3) 36 27 21-33 & 63-75 5′ end: group (3) 37 2819-31 & 61-73 5′ end: group (3) 38 29 19-31 & 63-75 5′ end: group (3) 3930 21-33 & 59-71 5′ end: group (3) 40 31 23-35 & 61-73 5′ end: group (3)41 32 23-35 & 63-75 5′ end: group (3) 42 33 23-35 & 59-71 5′ end: group(3) 43 34 19-31 & 89-101 5′ end: group (3) 6 35 61-73 & 91-103 5′ end:group (3) 44 36 61-73 & 72-84 5′ end: group (3) 45 37 24-33 & 62-71 5′end: group (3) 46 38 24-33 & 65-74 5′ end: group (3) 47 39 61-70 & 75-845′ end: group (3) 48 40 22-31 & 65-74 5′ end: group (3) 49 41 17-29 &91-103 5′ end: group (3) 50 42 33-44 & 62-74 5′ end: group (3) 51 4326-37 & 65-76 5′ end: group (3) 52 44 23-33 & 61-71 5′ end: group (3) 5345 23-33 & 65-75 5′ end: group (3) 7 46 22-32 & 64-74 5′ end: group (3)54 47 59-68 & 77-86 5′ end: group (3) 55 48 58-70 & 75-87 5′ end: group(3) 56 49 22-33 & 63-74 5′ end: group (3) 8 50 61-73 & 81-93 5′ end:group (3) 57 51 93-103 & 25-35 5′ end: group (3) 58 52 17-29 ATT 91-1025′ end: group (3) 59 53 92-103 & 22-33 5′ end: group (3) 60 54 91-103 &19-31 5′ end: group (3) 61 55 61-73 & 19-31 5′ end: group (3) 62 5661-73 & 85-97 5′ end: group (3) 63 57 69-81 CTCC 61-68 5′ end: group (3)64 58 93-105 & 23-35 5′ end: group (3) 65 59 90-103 & 25-36 5′ end:group (3) 66 60 CT-[61-76]-AC 5′ end: group (3) 67 61 84-96 & 21-33 5′end: group (3) 68 62 81-93 & 23-35 5′ end: group (3) 69 63 CC-[61-80]-CC5′ end: group (3) 70 64 CTT-[61-78]-CCC 5′ end: group (3) 71 65 84-93 &23-33 5′ end: group (3) 72 66 89-101 & 19-31 5′ end: group (3) 73 6791-103 & 61-73 5′ end: group (3) 74 68 61-71 & 91-105 5′ end: group (3)75 69 20-30 & 89-99 5′ end: group (3) 76 70 64-74 & 93-103 5′ end: group(3) 77 71 20-31 & 89-100 5′ end: group (3) 78 72 1-13 & 76-88 5′ end:group (3) 79 73 64-75 & 92-103 5′ end: group (3) 9 74 99-108 & 19-34 5′end: group (3) 80 75 58-67 & 76-85 5′ end: group (3) 81 76 58-67 & 77-865′ end: group (3) 82 77 23-33 & 92-102 5′ end: group (3) 83 78 20-30 &90-100 5′ end: group (3) 84 79 93-104 & 22-33 5′ end: group (3) 85 8093-103 & 23-33 5′ end: group (3) 86 81 64-73 & 76-85 5′ end: group (3)87 82 64-74 & 86-95 5′ end: group (3) 88 83 58-66 & 77-85 5′ end: group(3) 89 84 64-73 & 84-93 5′ end: group (3) 90 85 21-31 & 90-100 5′ end:group (3) 91 86 20-30 & 87-97 5′ end: group (3) 92 87 27-36 & 89-97 5′end: group (3) 93 88 20-29 ATT 91-100 5′ end: group (3) 94 89 20-29 ATT91-97 5′ end: group (3) 95 90 20-29 & 88-97 5′ end: group (3) 96 9122-31 & 63-74 5′ end: group (3) 97 92 64-76 & 96-102 + C 5′ end: group(3) 98 93 58-68 & 77-85 + C 5′ end: group (3) 99 94 22-36 & 89-97 5′end: group (3) 100 95 19-31 & 89-100 5′ end: group (3) 101 96 22-31 &87-97 5′ end: group (3) 102 97 −1-11 & 62-73 5′ end: group (3) 103 98−1-11 & 89-100 5′ end: group (3) 104 99 −1-11 & 20-31 5′ end: group (3)105 100 20-31 & 89-101 5′ end: group (3) 106 101 19-31 & 90-101 5′ end:group (3) 107 102 20-31 & 90-101 5′ end: group (3) 108 103 −1-13 & 76-825′ end: group (3) 109 104 −1-10 & 63-73 5′ end: group (3) 110 105 −1-10& 90-100 5′ end: group (3) 111 106 −1-10 & 20-30 5′ end: group (3) 112107 20-31 & 91-101 5′ end: group (3) 113 108 19-31 & 89-101 5′ end:group (3) 6 3′ end: acetylation 109 20-31 5′ end: group (3) 114 11065-75 5′ end: group (3) 115 111 23-33 5′ end: group (3) 116 112 92-1035′ end: group (3) 117 113 64-75 5′ end: group (3) 118 114 89-101 5′ end:group (3) 119 115 19-31 5′ end: group (3) 120 116 20-31 & 89-101 5′ end:group (3) 106 3′ end: acetylation 117 63-74 5′ end: group (3) 121 11822-33 5′ end: group (3) 122 119 59-68 5′ end: group (2) 123 120 77-86 5′end: group (2) 124

Example 1

As a base at 5′-terminus, 0.2 g of 4-{[(2S,6R)-6-(4-benzamide-2-oxopyrimidin-1(2H)-yl)-4-tritylmorpholin-2-yl]methoxy}4-oxobutanoic acid supported onan aminopolystyrene resin (Reference Example 1), 4-{[(2S,6R)-6-(5-methyl-2,4-dioxopyrimidine-1-yl)-4-tritylmorpholin-2-yl]methoxy}-4-oxobutanoic acid supported on an aminopolystyrene resin(Reference Example 2), 4-{[(2S, 6R)-6-(6-benzamidopurin-9-yl)-4-tritylmorpholin-2-yl] methoxy}-4-oxobutanoic acidsupported on an aminopolystyrene resin (Reference Example 3), or4-{{(2S, 6R)-6-{6-(2-cyanoethoxy)-2-[(2-phenoxyacetyl) amino]purin-9-yl}-4-tritylmorpholin-2-yl}methoxy}-4-oxobutanoic acid supportedon an aminopolystyrene resin (Reference Example 4), was filled in acolumn with a filter. Then, the synthetic cycle shown below was startedusing an oligonucleotide synthesizer (AKTA Oligopilot 10 plus). Thedesired morpholino monomer compound was added in each coupling cycle togive the base sequence described in Table 1 (see the Table 2 below).

TABLE 2 Volume Time Step Reagent (mL) (min)) 1 deblocking solution 18 to32 1.8 to 3.2 2 neutralizing and washing 30 1.5 solution 3 couplingsolution B 5 0.5 4 coupling solution A 1.3 0.25 5 coupling reaction bythe 120 to 300 reagents added in the steps 3 and 4 6 acetonitrile 20 1.07 capping solution 9 2.0 8 acetonitrile 30 2.0 Note: Steps 1, 2, 7 and 8were performed again after final cycle only in case of acetylation of3′-terminus.

The deblocking solution used was dichloromethane solution containing 3%(w/v) trifluoroacetic acid. The neutralizing and washing solution usedwas a solution obtained by dissolving N,N-diisopropylethylamine to be10% (v/v) and tetrahydrofuran to be 5% (v/v) in dichloromethanecontaining 35% (v/v) acetonitrile. The coupling solution A used was asolution obtained by dissolving the morpholino monomer compound intetrahydrofuran to be 0.10 M. The coupling solution B used was asolution obtained by dissolving N,N-diisopropylethylamine to be 20%(v/v) and tetrahydrofuran to be 10% (v/v) in acetonitrile. The cappingsolution used was a solution obtained by dissolving 20% (v/v) aceticanhydride and 30% (v/v) 2,6-lutidine in acetonitrile.

The aminopolystyrene resin loaded with the PMO synthesized above wasrecovered from the reaction vessel and dried at room temperature for atleast 2 hours under reduced pressure. The dried PMO loaded ontoaminopolystyrene resin was charged in a reaction vessel, and 5 mL of 28%ammonia water-ethanol (1/4) was added thereto. The mixture was stirredat 55° C. for 15 hours. The aminopolystyrene resin was separated byfiltration and washed with 1 mL of water-ethanol (1/4). The resultingfiltrate was concentrated under reduced pressure. The resulting residuewas dissolved in 10 mL of a solvent mixture of 20 mM of aceticacid-triethylamine buffer (TEAA buffer) and acetonitrile (4/1) andfiltered through a membrane filter. The filtrate obtained was purifiedby reversed phase HPLC. The conditions used are as shown in Table 3below.

TABLE 3 Column XBridge 5 μm C18 (Waters, φ19 × 50 mm, 1 CV = 14 mL) Flowrate 10 mL/min Column temperature room temperature Solution A 20 mM TEAAbuffer Solution B CH₃CN Gradient (B) conc. 10→70%/15 CV CV: columnvolume

Each fraction was analyzed, and the objective product was recovered andconcentrated under reduced pressure. To the concentrated residue wasadded 0.5 mL of 2 M phosphoric acid aqueous solution, and the mixturewas stirred for 15 minutes. Furthermore, 2 mL of 2 M sodium hydroxideaqueous solution was added to make the mixture alkaline, followed byfiltration through a membrane filter (0.45 μm).

The resulting aqueous solution containing the objective product waspurified by an anionic exchange resin column. The conditions used are asshown in Table 4 below.

TABLE 4 Column Source 15Q (GE Healthcare, φ10 × 108 mm, 1 CV = 8.5 mL)Flow rate 8.5 mL/min Column room temperature temperature Solution A 10mM sodium hydroxide aqueous solution Solution B 10 mM sodium hydroxideaqueous solution, 1M sodium chloride aqueous solution Gradient (B) conc.1→50%/40CV

Each fraction was analyzed (on HPLC) and the objective product wasobtained as an aqueous solution. To the resulting aqueous solution wasadded 0.1 M phosphate buffer (pH 6.0) for neutralization. Next, themixture obtained was desalted by reversed phase HPLC under theconditions described in Table 5 below.

TABLE 5 Column XBridge 5 μm C8 (Waters, φ10 × 50 mm, 1 CV = 4 mL) Flowrate 4 mL/min Column temperature 60° C. Solution A water Solution BCH₃CN Gradient (B) conc. 0→50%/20CV

The objective product was recovered and the mixture was concentratedunder reduced pressure. The resulting residue was dissolved in water.The aqueous solution obtained was freeze-dried to give the objectivecompound as a white cotton-like solid.

The calculated values and the found values of ESI-TOF-MS are representedin the Table 6 below.

TABLE 6 PMO No. Target sequence in exon 44 Calcd. Found 1H44_11-23_91-103 8539.94 8539.52 2 H44_11-23_61-73 8551.97 8552.69 3H44_11-23_71-83 8533.95 8535.46 4 H44_21-33_91-103 8507.92 8507.71 5H44_21-33_81-93 8543.96 8543.98 6 H44_21-33_101-113 8534.95 8535.75 7H44_21-33_61-73 8519.95 8520.14 8 H44_21-33_71-83 8501.93 8501.81 9H44_21-35_101-115 9882.42 9882.06 10 H44_11-25_91-105 9869.39 9870.94 11H44_16-25_101-115 8226.85 8227.78 12 H44_21-35_91-105 9855.39 9855.53 13H44_11-23_101-113 8566.97 8566.58 14 H44_23-35_91-103 8540.94 8541.52 15H44_19-31_91-103 8491.92 8491.90 16 H44_21-33_89-101 8541.94 8541.87 17H44_11-23_81-93 8575.98 8576.67 18 H44_19-31_93-105 8475.92 8476.50 19H44_23-35_89-101 8574.96 8574.70 20 H44_23-35_93-105 8524.94 8524.71 21H44_22-33_92-103 7822.69 7823.21 22 H44_91-103_21-33 8507.92 8508.59 23H44_22-32_92-102 7177.47 7177.58 24 H44_22-31_93-102 6492.24 6492.03 25H44_19-31_59-71 8478.94 8478.90 26 H44_21-33_93-105 8491.92 8492.33 27H44_21-33_63-75 8470.93 8471.00 28 H44_19-31_61-73 8503.95 8503.87 29H44_19-31_63-75 8454.93 8454.94 30 H44_21-33_59-71 8494.94 8494.90 31H44_23-35_61-73 8552.97 8552.40 32 H44_23-35_63-75 8503.95 8504.17 33H44_23-35_59-71 8527.96 8527.97 34 H44_19-31_89-101 8525.94 8525.93 35H44_61-73_91-103 8595.95 8595.95 36 H44_61-73_72-84 8589.96 8590.03 37H44_24-33_62-71 6520.27 6519.69 38 H44_24-33_65-74 6520.27 6520.36 39H44_61-70_75-84 6574.28 6573.63 40 H44_22-31_65-74 6495.26 6495.21 41H44_17-29_91-103 8515.93 8515.62 42 H44_33-44_62-74 8254.88 8254.88 43H44_26-37_65-76 7876.75 7876.96 44 H44_23-33_61-71 7189.50 7189.75 45H44_23-33_65-75 7180.49 7180.75 46 H44_22-32_64-74 7165.49 7165.64 47H44_59-68_77-86 6559.28 6559.32 48 H44_58-70_75-87 8566.97 8567.64 49H44_22-33_63-74 7810.71 7810.77 50 H44_61-73_81-93 8631.99 8632.04 51H44_93-103_25-35 7195.49 7195.55 52 H44_17-29_ATT_91-102 9185.16 9186.4153 H44_92-103_22-33 7822.69 7822.17 54 H44_91-103_19-31 8491.92 8491.7755 H44_61-73_19-31 8503.95 8503.41 56 H44_61-73_85-97 8591.98 8591.55 57H44_69-81_CTCC_61-68 8164.83 8165.78 58 H44_93-105_23-35 8524.94 8525.0559 H44_90-103_25-36 8558.96 8558.71 60 CT-[H44_61-76]-AC 6534.27 6534.0461 H44_84-96_21-33 8518.95 8518.86 62 H44_81-93_23-35 8576.98 8577.13 63CC-[H44_61-80]-CC 7819.72 7818.92 64 CTT-[H44_61-78]-CCC 7825.71 7825.0265 H44_84-93_23-33 6883.40 6882.97 66 H44_89-101_19-31 8525.94 8526.4667 H44_91-103_61-73 8595.95 8595.17 68 H44_61-71_91-105 8579.95 8579.7169 H44_20-30_89-99 7186.48 7186.30 70 H44_64-74_93-103 7201.48 7202.0071 H44_20-31_89-100 7831.70 7831.77 72 H44_1-13_76-88 8551.97 8552.42 73H44_64-75_92-103 7861.70 7861.72 74 H44_99-108_19-34 8583.97 8583.87 75H44_58-67_76-85 6534.27 6533.87 76 H44_58-67_77-86 6543.28 6542.70 77H44_23-33_92-102 7177.47 7176.76 78 H44_20-30_90-100 7161.47 7161.32 79H44_93-104_22-33 7822.69 7823.23 80 H44_93-103_23-33 7177.47 7177.09 81H44_64-73_76-85 6550.27 6549.41 82 H44_64-74_86-95 6922.41 6921.39 83H44_58-66_77-85 5889.05 5888.11 84 H44_64-73_84-93 6592.30 6591.14 85H44_21-31_90-100 7161.47 7160.62 86 H44_20-30_87-97 7179.49 7178.65 87H44_27-36_89-97 6214.17 6213.81 88 H44_20-29_ATT_91-100 7506.58 7505.7989 H44_20-29_ATT_91-97 6491.24 6490.34 90 H44_20-29_88-97 6525.266523.73 91 H44_22-31_63-74 7140.48 7139.34 92 H44_64-76_96-102 + C6871.37 6869.58 93 H44_58-68_77-85 + C 6874.39 6872.78 94H44_22-36_89-97 7858.73 7859.53 95 H44_19-31_89-100 8170.82 8171.89 96H44_22-31_87-97 6849.38 6849.17 97 H44_−1-11_62-73 7898.74 7899.01 98H44_−1-11_89-100 7904.73 7904.14 99 H44_−1-11_20-31 7794.71 7794.30 100H44_20-31_89-101 8186.82 8186.63 101 H44_19-31_90-101 8170.82 8170.92102 H44_20-31_90-101 7831.70 7831.48 103 H44_−1-13_76-82 6849.38 6848.35104 H44_−1-10_63-73 7213.51 7211.46 105 H44_−1-10_90-100 7219.50 7218.65106 H44_−1-10_20-30 7149.49 7151.40 107 H44_20-31_91-101 7492.58 7493.67108 H44_19-31_89-101(N—Ac) 8567.95 8568.51 109 H44_20-31 3816.34 3816.82110 H44_65-75 3565.25 3565.61 111 H44_23-33 3526.24 3526.57 112H44_92-103 3892.34 3892.71 113 H44_64-75 3880.36 3880.72 114 H44_89-1014281.48 4282.08 115 H44_19-31 4155.46 4156.03 116 H44_20-31_89-101(N—Ac)8228.83 8229.03 117 H44_63-74 3880.36 3880.21 118 H44_22-33 3841.353841.30

Test Example 1

In Vitro Assay

Using an Amaxa Cell Line Nucleofector Kit L on Nucleofector II (Lonza),0.1 to 30 μM of the antisense oligomers in Table 1 were transfected with3.5×10⁵ of RD cells (human rhabdomyosarcoma cell line). The ProgramT-030 was used.

After transfection, the cells were cultured for three nights in 2 mL ofEagle's minimal essential medium (EMEM) (manufactured by Sigma,hereinafter the same) containing 10% fetal calf serum (FCS)(manufactured by Invitrogen) under conditions of 37° C. and 5% CO₂.

The cells were washed one time with PBS (manufactured by Nissui,hereinafter the same) and 350 μl of Buffer RLT (manufactured by Qiagen)containing 1% 2-mercaptoethanol (manufactured by Nacalai Tesque) wasadded to the cells. After the cells were allowed to stand at roomtemperature for a few minutes to lyse the cells, the lysate wascollected in a QIAshredder homogenizer (manufactured by Qiagen). Thenthe lysate was centrifuged at 15,000 rpm for 2 minutes to prepare thehomogenate. The total RNA was extracted according to the protocolattached to RNeasy Mini Kit (manufactured by Qiagen). The concentrationof the total RNA extracted was determined using a NanoDrop ND-1000(manufactured by LMS).

One-Step RT-PCR was performed with 400 ng of the extracted total RNAusing a QIAGEN OneStep RT-PCR Kit (manufactured by Qiagen). A reactionsolution was prepared in accordance with the protocol attached to thekit. PTC-100 (manufactured by MJ Research) or TaKaRa PCR Thermal CyclerDice Touch (manufactured by Takara Bio) was used as a thermal cycler.The RT-PCR program used is as follows.

-   -   50° C., 30 mins: reverse transcription reaction    -   95° C., 15 mins: activation of polymerase, inactivation of        reverse transcriptase, thermal denaturation of cDNA    -   [94° C., 30 seconds; 60° C., 30 seconds; 72° C., 1 min]×35        cycles: PCR amplification 72° C., 10 mins: final extension

The base sequences of the forward primer and reverse primer used forRT-PCR are given below.

(SEQ ID NO: 125) Forward primer: 5′- GCTCAGGTCGGATTGACATT -3′(SEQ ID NO: 126) Reverse primer: 5′- GGGCAACTCTTCCACCAGTA -3′

The reaction product, 1 μL of the PCR above was analyzed using aBioanalyzer (manufactured by Agilent Technologies, Inc.).

The polynucleotide level “A” of the band with exon 44 skipping and thepolynucleotide level “B” of the band without exon 44 skipping weremeasured. Based on these measurement values of “A” and “B”, the skippingefficiency was determined by the following equation:Skipping efficiency (%)=A/(A+B)×100Experimental Results

The results are shown in FIGS. 1 to 26. This experiment revealed that,the oligomer of the present invention obtained by connecting short unitoligomers selected from the—1st to the 44th bases (SEQ ID NO: 1) and the58th to the 115th bases (SEQ ID NO: 2), respectively, from the 5′ end ofthe nucleotide sequence of exon 44 (SEQ ID NO: 10) in the humanwild-type dystrophin gene effectively cause exon 44 skipping.

Test Example 2

In Vitro Assay

The experiment was performed as in TEST EXAMPLE 1 except for that3.5×10⁵ of RD cells (human rhabdomyosarcoma cell line) were transfectedwith the oligomers of the present invention of PMO Nos. 34, 100, 45, 73,49 and 47 each being alone or in the form where two unit oligomersconstituting each oligomer are contained alone or in mixture, at aconcentration of 1, 3 or 10 μM, using an Amaxa Cell Line NucleofectorKit L on Nucleofector II (Lonza). The Program T-030 was used. Thecombinations of the sequences for the transfection are as follows.

TABLE 7 Combination of transfected sequences conc. of transfectedcombination of sequences oligomer (μM) 1 PMO No. 34 1 μM 2 PMO No. 115or PMO No. 114 or a mixture 1 μM each 3 PMO No. 100 1 μM 4 PMO No. 109or PMO No. 114 or a mixture 1 μM each 5 PMO No. 45 1 μM 6 PMO No. 111 orPMO No. 110 or a mixture 1 μM each 7 PMO No. 73 1 μM 8 PMO No. 113 orPMO No. 112 or a mixture 1 μM each 9 PMO No. 49 1 μM 10 PMO No. 117 orPMO No. 118 or a mixture 1 μM each 11 PMO No. 47 3 or 10 μM 12 PMO No.119 or PMO No. 120 or a mixture 3 or 10 μM eachExperimental Results

The results are shown in FIGS. 27 to 31. This experiment revealed that,each of PMO Nos. 110 to 115, PMO No. 117 and PMO No. 118 targeting asite in exon 44 could not cause exon 44 skipping by itself. Thisexperiment also revealed that, as compared with mixtures of twoantisense nucleic acids targeting different sites in exon 44 (themixture of PMO No. 114 and PMO No. 115; the mixture of PMO No. 109 andPMO No. 114; the mixture of PMO No. 110 and PMO No. 111; the mixture ofPMO No. 112 and PMO No. 113; the mixture of PMO No. 117 and PMO No. 118;and the mixture of PMO No. 119 and PMO No. 120), the oligomers of thepresent invention of PMO No. 34, PMO No. 100, PMO No. 45, PMO No. 73,PMO No. 49 and PMO No. 47, where each corresponding unit oligomers areconnected with each other, cause exon 44 skipping with highefficiencies.

Test Example 3

In Vitro Assay Using Human Fibroblasts

The exon 44 skipping activity was determined using GM05112 cells (humanDMD patient-derived fibroblasts with deletion of exon 45, CoriellInstitute for Medical Research). As a growth medium, there was usedDulbecco's Modified Eagle Medium: Nutrient Mixture F-12 (DMEM/F-12)(Life Technologies) containing 10% FCS (HyClone Laboratories, Inc.) and1% Penicillin/Streptmycin (P/S) (Sigma-Aldrich, Inc.) and the cells werecultured under conditions of 37° C. and 5% CO₂.

The cells were cultured in T225 flask and the 2.5 mL of retrovirus(ZsGreen1 coexpression) expressing human derived myoD (SEQ ID NO: 127)and a final concentration of 8 μg/mL of polybrene (Sigma-Aldrich, Inc.)were added to 30 mL of the growth medium. After incubation at 32° C. for2 days, the medium was exchanged to a fresh growth medium and incubationwas further continued at 37° C. for 3 days. ZsGreen1-positiveMyoD-transformed fibroblasts were collected by BD FACSAria Cell Sorter(BD Bioscience). The collected cells were suspended in a differentiationmedium (DMEM/F-12 containing 2% equine serum (LifeTechnologies), 1% P/Sand ITS Liquid Media Supplement (Sigma-Aldrich, Inc.)) and plated at9.4×10⁴ cells/well into a collagen-coated 24-well plate. The medium wasexchanged every 2 to 3 days and incubation was continued todifferentiate into myotubes.

On the 7th day after plating on a 24-well plate, the medium was replacedby a differentiation medium, and 10 μM of the oligomers PMO No. 34, 45,49 and 73 were added thereto at a final concentration. After the cellswere incubated for 2 days, the medium was replaced by a differentiationmedium without PMO, and the cells were incubated five more days. Thenthe cells were collected to extract total RNA using RNeasy Mini Kit(QIAGEN). RT-PCR was performed with 50 ng of the extracted total RNAusing a QIAGEN OneStep RT-PCR Kit. A reaction solution was prepared inaccordance with the protocol attached to the kit. An iCycler(manufactured by Bio-Rad Laboratories) was used as a thermal cycler. TheRT-PCR program used is as follows.

-   -   50° C., 30 mins: reverse transcription reaction    -   95° C., 15 mins: activation of polymerase, inactivation of        reverse transcriptase, thermal denaturation of cDNA    -   [94° C., 1 min; 60° C., 1 min; 72° C., 1 min]×35 cycles: PCR        amplification 72° C., 7 mins: final extension

The base sequences of the forward primer and reverse primer used forRT-PCR are given below.

(SEQ ID NO: 125) Forward primer: 5′- GCTCAGGTCGGATTGACATT -3′(SEQ ID NO: 126) Reverse primer: 5′- GGGCAACTCTTCCACCAGTA -3′

1 μL of PCR product was analyzed by Experion DNA 1K Analysis Kits(Bio-Rad Laboratories) using Experion Electrophoresis Station (Bio-RadLaboratories). DNA 1K assay was selected on Experion Software version3.2 (Bio-Rad Laboratories) and measured. The level (A) of the bandaround 317 bp and the level (B) of the band around 465 bp weredetermined (unit: nmol/L). The skipping efficiency (%) was determined bythe following equation using Excel 2007 SP3 (Microsoft).Skipping efficiency (%)=A/(A+B)×100Experimental Results

The results are shown in FIG. 32. This experiment revealed that, theantisense oligomers of the present invention of PMO Nos. 34, 45, 49 and73, could cause exon 44 skipping with a high efficiency in cells from aDMD patient with deletion of exon 45.

INDUSTRIAL APPLICABILITY

Experimental results in TEST EXAMPLES demonstrate that the oligomers ofthe present invention in which short oligomers are connected caused exon44 skipping in RD cells. Therefore, the oligomers of the presentinvention are extremely useful for the treatment of DMD.

Sequence listing free text

The invention claimed is:
 1. An antisense oligomer having a length of 15to 30 bases, or a pharmaceutically acceptable salt or hydrate thereof,wherein the antisense oligomer is formed by connecting (a) a first unitoligomer of 7 to 15 bases consisting of a nucleotide sequencecomplementary to a first nucleotide sequence of 7 to 15 consecutivebases selected within SEQ ID NO: 3, SEQ ID NO: 4, or SEQ ID NO: 5; and(b) a second unit oligomer of 7 to 15 bases consisting of a nucleotidesequence complementary to a second nucleotide sequence of 7 to 15consecutive bases selected within SEQ ID NO: 3, SEQ ID NO: 4, or SEQ IDNO: 5, wherein the first nucleotide sequence and the second nucleotidesequence are neither consecutive nor overlap with each other, whereinthe antisense oligomer induces skipping of Exon 44 of a human dystrophingene, and wherein the antisense oligomer is (i) an oligonucleotidecomprising at least one nucleotide having the sugar moiety and/or thephosphate-binding region modified; or (ii) a morpholino oligomer.
 2. Theantisense oligomer according to claim 1, or a pharmaceuticallyacceptable salt or hydrate thereof, wherein the antisense oligomer is anoligonucleotide comprising at least one nucleotide having the sugarmoiety and/or the phosphate-binding region modified.
 3. The antisenseoligomer according to claim 2, or a pharmaceutically acceptable salt orhydrate thereof, wherein the modified sugar moiety is a ribose in whichthe 2′-OH group is replaced by any one selected from the groupconsisting of OR, R, R′OR, SH, SR, NH₂, NHR, NR₂, N₃, CN, F, Cl, Br andI (wherein R is an alkyl or an aryl and R′ is an alkylene).
 4. Theantisense oligomer according to claim 2, or a pharmaceuticallyacceptable salt or hydrate thereof, wherein the modifiedphosphate-binding region is any one selected from the group consistingof a phosphorothioate bond, a phosphorodithioate bond, analkylphosphonate bond, a phosphoramidate bond, and a boranophosphatebond.
 5. The antisense oligomer according to claim 1, or apharmaceutically acceptable salt or hydrate thereof, wherein theantisense oligomer is a morpholino oligomer.
 6. The antisense oligomeraccording to claim 5, or a pharmaceutically acceptable salt or hydratethereof, wherein the antisense oligomer is a phosphorodiamidatemorpholino oligomer.
 7. The antisense oligomer according to claim 5, ora pharmaceutically acceptable salt or hydrate thereof, wherein the 5′end of the morpholino oligomer is any one of chemical formulae (1) to(3) below:


8. A pharmaceutical composition for the treatment of muscular dystrophy,comprising as an active ingredient the antisense oligomer according toclaim 1, or a pharmaceutically acceptable salt or hydrate thereof. 9.The pharmaceutical composition according to claim 8, further comprisinga pharmaceutically acceptable carrier.
 10. The antisense oligomer ofclaim 1, or a pharmaceutically acceptable salt or hydrate thereof,wherein antisense oligomer has a length of 15 to 26 bases, and whereineach of the first unit oligomer and the second unit oligomer has alength of 7 to 13 bases.
 11. The antisense oligomer of claim 1, or apharmaceutically acceptable salt or hydrate thereof, wherein antisenseoligomer has a length of 18 to 30 bases, and wherein each of the firstunit oligomer and the second unit oligomer has a length of 9 to 15bases.
 12. A method for treatment of muscular dystrophy, which comprisesadministering to a patient with muscular dystrophy the antisenseoligomer according to claim 1, or a pharmaceutically acceptable salt orhydrate thereof.
 13. The method for treatment according to claim 12,wherein the patient with muscular dystrophy has a mutation(s) which isto be targeted for Exon 44 skipping in dystrophin gene.
 14. The methodfor treatment according to claim 12, wherein the patient is a human. 15.A method for treatment of muscular dystrophy, which comprisesadministering to a patient with muscular dystrophy the pharmaceuticalcomposition according to claim
 8. 16. A method for manufacturing of theantisense oligomer according to claim 1, which comprises connecting (a)a first unit oligomer of 7 to 15 bases consisting of a nucleotidesequence complementary to a first nucleotide sequence of 7 to 15consecutive bases selected within SEQ ID NO: 3, SEQ ID NO: 4, or SEQ IDNO: 5; and (b) a second unit oligomer of 7 to 15 bases consisting of anucleotide sequence complementary to a second nucleotide sequence of 7to 15 consecutive bases selected within SEQ ID NO: 3, SEQ ID NO: 4, orSEQ ID NO: 5, to produce the antisense oligomer according to claim 1,wherein the first nucleotide sequence and the second nucleotide sequenceare neither consecutive nor overlap with each other.
 17. The methodaccording to claim 16, which further comprises: measuring the efficiencyof skipping by the obtained antisense oligomer; and selecting anantisense oligomer having the efficiency of skipping that exceeds areference value.
 18. A method for screening of an antisense oligomer,which comprises: (a) selecting (i) a first unit oligomer of 7 to 15bases consisting of a nucleotide sequence complementary to a firstnucleotide sequence of 7 to 15 consecutive bases selected within SEQ IDNO: 3, SEQ ID NO: 4, or SEQ ID NO: 5; and (ii) a second unit oligomer of7 to 15 bases consisting of a nucleotide sequence complementary to asecond nucleotide sequence of 7 to 15 consecutive bases selected withinSEQ ID NO: 3, SEQ ID NO: 4, or SEQ ID NO: 5, wherein the firstnucleotide sequence and the second nucleotide sequence are neitherconsecutive nor overlap with each other; (b) connecting the first andsecond unit oligomers to produce an antisense oligomer having a lengthof 15 to 30 bases; (c) measuring the efficiency of skipping Exon 44 of ahuman dystrophin gene by the antisense oligomer obtained in the step(b); and (d) selecting an antisense oligomer having the efficiency ofskipping that exceeds a reference value.